PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027105014.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 1722aa MW: 187414 Da PI: 6.3438

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027105014.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.2	8.8e-09	818	859	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e + d + +G++ +++Ia+ + ++t +c+++++k XP_027105014.1 818 PWTSEEKEMFMDKLAVHGKD-FTKIASFLV-HKTTADCVEFYYK 859 8***************99.*****.*********98 PP
2	Myb_DNA-binding	33.4	1.1e-10	1037	1077	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE ++++av +G++ ++ I+r++ +R+++qck ++ XP_027105014.1 1037 DWTDEEKAIFIQAVSSYGKD-FAMISRYVS-TRSREQCKVFFS 1077 5***************99.*****.******8876 PP

Sequence ? help Back to Top
Protein Sequence Length: 1722 aa Download sequence
MPPEPLPWDR KDFFKERKHE RQEPYHHHHH HHHLHPTGGG GGGGGGYGGG IGGFGGGPRW 60 REPPHPHPHP YHYASPRWVS DFRYRPPPGY GKQGGRHLYP EESSHGFVPS RPSDRVFEDE 120 NCRGSVSGKY SRSNRESRGP FGQKDWKGQS WEATPSPNAP GRPLETSDQH RSVDEMQTCT 180 SSHPHLDSAN SWDQSHLKDQ HEKSSGVVNA LGSSGQRLER ENSLGSMDWK PLKWTRSGSL 240 SSRGSGFSHS SSSKSMGADS NEMKAEVQPS NVTPVQSPSG NAATPVAAPA AAYETSAGAS 300 EEMSSRKKPR LGWGEGLAKY EKKKVEGVDD TTLKNGTIIC SSSREPLHLH SSHLADKSPR 360 ITAFSDCASP ATPSSVGCSS SPGLEEKQFI KAPSVDNEAT NLSPSIASQD HRDHIEGATF 420 NLENLDLAES GHFNSAINEL LLSDDLISVD SGFVKSTAIN KLLVWKGDVL KKLEMTESEI 480 DRLEGELKTL ASIPESSCHH PAVSSSLPMD CFSKPAEEQD VTSSISHRPA LLDLGSSGHN 540 DAEKMPNVLV DDDAKVKDED VDSPGSATSK FVEVVSSGKD ASPSEPGSEP GNDSVCISNT 600 DCAMSKNLEL SYVGNGVHED NGGENFQLVA SCSPTHLDEI SLCDDKELKL CESIFASNKE 660 SASRAAEVFN KLLPADLCKF DISGVCSLKS NSIVKENFLR RKRFQQFKER CIALKYRALQ 720 HLWKADVCSL SMRRFRVKSH KKLDLSLRTV LNSSQKHRTS FRSRLSSHDS QVKPCRDTLK 780 MPAMILDKKE KMISRFISSN GLVEDPSAVE KERSMINPWT SEEKEMFMDK LAVHGKDFTK 840 IASFLVHKTT ADCVEFYYKN HKSDCLKKTK KHPEYPKQGK SYTANNYLVA SGKRWHCEAN 900 AASLDILGAA SAIAANVDDG MEIQQTSTSK YLLGRSSDYK SSKGDNGLLE RLSSLDADNN 960 ERETAAADVL AGICGSLSSE AMSSCITSAV DPGEGYHEWK YSRVGSSSRL PLTPEAMQNG 1020 DEDTCSDESC GEMDPTDWTD EEKAIFIQAV SSYGKDFAMI SRYVSTRSRE QCKVFFSKAR 1080 KCLGLDMISP GPGNVVRRDA SGGSDTDDVG VVETGSITCS EKSGVKLEVD LPCPEVKLNI 1140 EPDSAGLANV NPDLNHLEEI SGTGDRAAVE AGLQSKNLTD DSQMEEKPEQ EADGNGDIQS 1200 VHSGEVEQGT AVTTRGVGET SDSANTLDTQ IHSGALEKRD EHLDAEMEGL SPVSWESSIN 1260 DRKEKDDANQ KDVNGMDQDL KSTPDGDISG DRQIGVLETD SVGRPCVVPI EQNGFPAPMK 1320 SVPQSCAVKC QTPNEATSSA LEAVKISGEQ GHQVTRVGEK LRSGSSLLGS VDPCQILKGY 1380 PLPPSTTREV NGNSSCRRSA TPQSFPKVDN NFHRDRHLAH DSYLQKCNGV KHYSSIAELP 1440 FKFREQSRDI NPDHQSGSPS DVEKPRRNGD VKLFGQILTK PSYQPKSSSS RQQNGDNENQ 1500 QSKIGKPLGT KFASDQAIGG NLSQTKLDRN NLLGTENLPV RSFAYWDGSR IQTGLHSLPD 1560 SAMLLAKYPA AFGNYVLPSS KLEQLPVHGV NNGERSLNGS AVFPAREIGS SNAAADYQAY 1620 RSRELQPFTL DMKQRQDAVL SEMHRRNGFD VVSGMQQAAR GLVGINVVSR AGILVGGQCT 1680 GVSDPVAAIK MHYSKAEQLN GGQTASIIRE DDSWRGKGSI GR

Sequence ? help Back to Top

Protein Sequence Length: 1722 aa Download sequence

MPPEPLPWDR KDFFKERKHE RQEPYHHHHH HHHLHPTGGG GGGGGGYGGG IGGFGGGPRW  60
REPPHPHPHP YHYASPRWVS DFRYRPPPGY GKQGGRHLYP EESSHGFVPS RPSDRVFEDE  120
NCRGSVSGKY SRSNRESRGP FGQKDWKGQS WEATPSPNAP GRPLETSDQH RSVDEMQTCT  180
SSHPHLDSAN SWDQSHLKDQ HEKSSGVVNA LGSSGQRLER ENSLGSMDWK PLKWTRSGSL  240
SSRGSGFSHS SSSKSMGADS NEMKAEVQPS NVTPVQSPSG NAATPVAAPA AAYETSAGAS  300
EEMSSRKKPR LGWGEGLAKY EKKKVEGVDD TTLKNGTIIC SSSREPLHLH SSHLADKSPR  360
ITAFSDCASP ATPSSVGCSS SPGLEEKQFI KAPSVDNEAT NLSPSIASQD HRDHIEGATF  420
NLENLDLAES GHFNSAINEL LLSDDLISVD SGFVKSTAIN KLLVWKGDVL KKLEMTESEI  480
DRLEGELKTL ASIPESSCHH PAVSSSLPMD CFSKPAEEQD VTSSISHRPA LLDLGSSGHN  540
DAEKMPNVLV DDDAKVKDED VDSPGSATSK FVEVVSSGKD ASPSEPGSEP GNDSVCISNT  600
DCAMSKNLEL SYVGNGVHED NGGENFQLVA SCSPTHLDEI SLCDDKELKL CESIFASNKE  660
SASRAAEVFN KLLPADLCKF DISGVCSLKS NSIVKENFLR RKRFQQFKER CIALKYRALQ  720
HLWKADVCSL SMRRFRVKSH KKLDLSLRTV LNSSQKHRTS FRSRLSSHDS QVKPCRDTLK  780
MPAMILDKKE KMISRFISSN GLVEDPSAVE KERSMINPWT SEEKEMFMDK LAVHGKDFTK  840
IASFLVHKTT ADCVEFYYKN HKSDCLKKTK KHPEYPKQGK SYTANNYLVA SGKRWHCEAN  900
AASLDILGAA SAIAANVDDG MEIQQTSTSK YLLGRSSDYK SSKGDNGLLE RLSSLDADNN  960
ERETAAADVL AGICGSLSSE AMSSCITSAV DPGEGYHEWK YSRVGSSSRL PLTPEAMQNG  1020
DEDTCSDESC GEMDPTDWTD EEKAIFIQAV SSYGKDFAMI SRYVSTRSRE QCKVFFSKAR  1080
KCLGLDMISP GPGNVVRRDA SGGSDTDDVG VVETGSITCS EKSGVKLEVD LPCPEVKLNI  1140
EPDSAGLANV NPDLNHLEEI SGTGDRAAVE AGLQSKNLTD DSQMEEKPEQ EADGNGDIQS  1200
VHSGEVEQGT AVTTRGVGET SDSANTLDTQ IHSGALEKRD EHLDAEMEGL SPVSWESSIN  1260
DRKEKDDANQ KDVNGMDQDL KSTPDGDISG DRQIGVLETD SVGRPCVVPI EQNGFPAPMK  1320
SVPQSCAVKC QTPNEATSSA LEAVKISGEQ GHQVTRVGEK LRSGSSLLGS VDPCQILKGY  1380
PLPPSTTREV NGNSSCRRSA TPQSFPKVDN NFHRDRHLAH DSYLQKCNGV KHYSSIAELP  1440
FKFREQSRDI NPDHQSGSPS DVEKPRRNGD VKLFGQILTK PSYQPKSSSS RQQNGDNENQ  1500
QSKIGKPLGT KFASDQAIGG NLSQTKLDRN NLLGTENLPV RSFAYWDGSR IQTGLHSLPD  1560
SAMLLAKYPA AFGNYVLPSS KLEQLPVHGV NNGERSLNGS AVFPAREIGS SNAAADYQAY  1620
RSRELQPFTL DMKQRQDAVL SEMHRRNGFD VVSGMQQAAR GLVGINVVSR AGILVGGQCT  1680
GVSDPVAAIK MHYSKAEQLN GGQTASIIRE DDSWRGKGSI GR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-106	MYB family protein