PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027105043.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 79aa    MW: 9094.97 Da    PI: 4.7079
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027105043.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding383.7e-122667245
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                       +++eE++l+++ +++ G + W++Ia +++ gR+++++  +w+
   XP_027105043.1 26 VEFSEEEEDLIIRMFNLVGER-WSLIAGRIP-GRSAEEIEKYWN 67
                     679******************.*********.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    
MAEAEHSSDE TCTHNLPEKK SGDSKVEFSE EEEDLIIRMF NLVGERWSLI AGRIPGRSAE  60
EIEKYWNSRH PTSQCSRNN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.18e-20MYB_related family protein