PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027105078.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 196aa    MW: 22327.6 Da    PI: 4.8895
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027105078.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407e-132873555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    + e+Er+RR+++ +++ eLr+l+P+      + ++Ka+i + A++YI +Lq
  XP_027105078.1 28 NLEAERKRRRKLSDRLLELRSLVPNI-----TNMNKATIITDAIDYIEELQ 73
                    6689*********************6.....58*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MAGLGDSPYD DYCASECEDE HKEFKSKNLE AERKRRRKLS DRLLELRSLV PNITNMNKAT  60
IITDAIDYIE ELQNTVRDLS DQLCQMDITL KEDMESQNKY VTDPAKEMKN WGIETEVKVT  120
RLNGAKLWIQ VVFQKKIGGF TKLMEAISVI GYDPKDVSVT TVKGALCVTS CVEAIHDGCV  180
EVDQIKNFLL ETTRRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13239ERKRRRKL
23337RKRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.12e-31bHLH family protein