PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027105153.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 388aa MW: 43970.9 Da PI: 5.0851

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027105153.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.2	4.3e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++++G g+W+t ++ g+ R++k+c++rw +yl XP_027105153.1 14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.3	3e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ XP_027105153.1 67 RGRFSFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MGRSPCCDKN GLKKGPWTPE EDQKLIDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG 120 IDPVTHSPRL DLLDLSSILN SSIYYSSSQQ INLSRLLGVQ PMVNPELLRL ATSLFSSQKK 180 NHQDIPTQND VQENQVVYTA PQVQNQLPPL IQPSEFQTSV QDIPTSDNLG TSLRTSTSCV 240 PFSCDQAQLM QPNAEQFSSA NLSDFINSQQ SCELNEWQNS EFLPPNFSED YYVPLQHYGC 300 YGSDNQSVLD TAPSETTSTF QSNNSNSFSF QSVLSTLSTP SSSPTPLQSN STYINSCSTT 360 TTEDERESYC SNILKYEIPE LLDVDQFM

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MGRSPCCDKN GLKKGPWTPE EDQKLIDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHSPRL DLLDLSSILN SSIYYSSSQQ INLSRLLGVQ PMVNPELLRL ATSLFSSQKK  180
NHQDIPTQND VQENQVVYTA PQVQNQLPPL IQPSEFQTSV QDIPTSDNLG TSLRTSTSCV  240
PFSCDQAQLM QPNAEQFSSA NLSDFINSQQ SCELNEWQNS EFLPPNFSED YYVPLQHYGC  300
YGSDNQSVLD TAPSETTSTF QSNNSNSFSF QSVLSTLSTP SSSPTPLQSN STYINSCSTT  360
TTEDERESYC SNILKYEIPE LLDVDQFM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	1e-101	MYB family protein