PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027105753.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 85aa    MW: 9319.3 Da    PI: 9.4883
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027105753.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.71.4e-091559244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     g+WT    + + +a + + ++   +W+++ar +g g+t+ ++k ++
   XP_027105753.1 15 GSWTVTQNKAFEKALAVYDKDtpdRWSKVARAVG-GKTPDEVKRHY 59
                     89********************************.**********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    
MASSSISSRS SSSSGSWTVT QNKAFEKALA VYDKDTPDRW SKVARAVGGK TPDEVKRHYE  60
ILVEDIKQIE GGHVPYPNYR TTASG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.15e-35MYB_related family protein