PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027105925.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 458aa MW: 51195.6 Da PI: 7.1328

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027105925.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.7	7.9e-17	99	187	2	98
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +k +++s+v+ +l+lpk+f++ h ++k+ ++l de+g++++ k+ ++k++ l++GW++F a++L egD++vF+l++ l+v + XP_027105925.1 99 VKHMLRSHVTGGFWLSLPKQFCNIH-LPKKD-GIVVLVDENGEEYKTKYLVEKNG----LSGGWRGFSIAHNLLEGDVLVFQLIKPCV--LKVYI 185 688999**************555.55434.48***********777777....*********************998444..47777 PP E- CS B3 97 fr 98 +r XP_027105925.1 186 VR 187 66 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MAISQFSPSK RSQYDPSTKL KQRKASEFKK KPVKKNPCGT QHDKINKGET HNIEKSLISY 60 EKIGDKTGDH SAYGKPKSSV LHRAHEVQAK LPSNFPCCVK HMLRSHVTGG FWLSLPKQFC 120 NIHLPKKDGI VVLVDENGEE YKTKYLVEKN GLSGGWRGFS IAHNLLEGDV LVFQLIKPCV 180 LKVYIVRANG LTELDGAICL LNLDFQDKSI DSANLKEENE DVKNCKTAEP DYSGPLANVL 240 ERGIVAVSSG HMPESARRSA SDNNELSLEV LDGVRFSESD VQFKDVKGFN GFSILVDGLV 300 IDSEIPLHLR AKYYQLCCSQ NSFLHDHLIK GLNCKLAAGI ISETVNIADA IRAAKLTTSC 360 EYLQTWDKTL KAFEDMGMAV EFLRARIKAL ISLPTEQEES MKSRTAERAQ LQEEMRNLET 420 KLLNVKEVIG TVDADIKALE VQEENLEEIF KEKATAPW

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MAISQFSPSK RSQYDPSTKL KQRKASEFKK KPVKKNPCGT QHDKINKGET HNIEKSLISY  60
EKIGDKTGDH SAYGKPKSSV LHRAHEVQAK LPSNFPCCVK HMLRSHVTGG FWLSLPKQFC  120
NIHLPKKDGI VVLVDENGEE YKTKYLVEKN GLSGGWRGFS IAHNLLEGDV LVFQLIKPCV  180
LKVYIVRANG LTELDGAICL LNLDFQDKSI DSANLKEENE DVKNCKTAEP DYSGPLANVL  240
ERGIVAVSSG HMPESARRSA SDNNELSLEV LDGVRFSESD VQFKDVKGFN GFSILVDGLV  300
IDSEIPLHLR AKYYQLCCSQ NSFLHDHLIK GLNCKLAAGI ISETVNIADA IRAAKLTTSC  360
EYLQTWDKTL KAFEDMGMAV EFLRARIKAL ISLPTEQEES MKSRTAERAQ LQEEMRNLET  420
KLLNVKEVIG TVDADIKALE VQEENLEEIF KEKATAPW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	1e-41	B3 family protein