PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027106197.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 220aa    MW: 24906.7 Da    PI: 8.7559
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027106197.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF885.3e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    kri+n + rqvtfskRr g++KKA+ELS+LCdae+a+i+fs tgkl+ey+s
  XP_027106197.1  9 KRIDNLTARQVTFSKRRRGLFKKAQELSTLCDAEIALIVFSATGKLFEYCS 59
                    79***********************************************96 PP
2K-box55.62.2e-19851721299
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     +++++ ++ +a L +ei++   e+Rhl+Ge+L  Ls+++L +Le+ +e +l++i ++K + ++++i  l+kke  l+een +Lr+k++
  XP_027106197.1  85 HHTQRENHTHAMLAEEIKEKTAELRHLKGEELVGLSMEDLVKLEKLVEAGLSRIAKTKGDKFMKEIGILKKKEALLKEENAKLRQKVA 172
                     578999999*****************************************************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MVRQRIQIKR IDNLTARQVT FSKRRRGLFK KAQELSTLCD AEIALIVFSA TGKLFEYCSS  60
SMMQVIERHR LCSEDIGRQD KHPPHHTQRE NHTHAMLAEE IKEKTAELRH LKGEELVGLS  120
MEDLVKLEKL VEAGLSRIAK TKGDKFMKEI GILKKKEALL KEENAKLRQK VAGTSEDETP  180
LLEQGISSES VTRLSDQAGS CPRDLNNSDT FLQLGLPCPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.18e-63MIKC_MADS family protein