PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027106285.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 363aa MW: 40706.3 Da PI: 7.5144

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027106285.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.4	1.1e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++ ++++G+g +W + +++ g++R++k+c++rw++yl XP_027106285.1 14 KGPWSPEEDAKLKEFIEKFGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	36.7	9.6e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ +Ed ++ + + G++ W+ Ia+ ++ gRt++++k++w++ XP_027106285.1 69 GEFSDDEDRIICSLYASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKEFIE KFGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FSDDEDRIIC SLYASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGM 120 IPLDPRKLPP FSNSLHTTSS PQSQAFSSLS QLYNDCSPYY STSAKSCLTG FESFPSVQPN 180 LLFNGNNNNV NPMATITTAN HHSYLQGHNQ EGLISPMQFY PGKDNMLIFG GTDQASCSSS 240 DGSCSQISYG KEIKQEHMNG GSLQGYNLSN STNGYDHHHH QENQKFMVDY GNQISSTTWG 300 DGRGNDHDQK PSVVLCGNST STTQLQYDLE EVKQLISSSN MSLFFNDENK THESREAMYY 360 YNY

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDAKLKEFIE KFGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDDEDRIIC SLYASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGM  120
IPLDPRKLPP FSNSLHTTSS PQSQAFSSLS QLYNDCSPYY STSAKSCLTG FESFPSVQPN  180
LLFNGNNNNV NPMATITTAN HHSYLQGHNQ EGLISPMQFY PGKDNMLIFG GTDQASCSSS  240
DGSCSQISYG KEIKQEHMNG GSLQGYNLSN STNGYDHHHH QENQKFMVDY GNQISSTTWG  300
DGRGNDHDQK PSVVLCGNST STTQLQYDLE EVKQLISSSN MSLFFNDENK THESREAMYY  360
YNY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	5e-78	MYB family protein