PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027106482.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family YABBY
Protein Properties Length: 214aa    MW: 23686.1 Da    PI: 7.8538
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027106482.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY237.92.1e-73181785170
           YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeenlksnvekeesastsvs 97 
                       +eq+Cyv+CnfC+t+lavsvP tslfk+vtvrCGhCt+llsvn++      a + hl++s+  +  lleel+++  nl  n+ + +++     
  XP_027106482.1  18 PPTEQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPSANQLHLGHSFFSPqnLLEELRNTPPNLLINQPNPNESL---- 108
                     5689***************************************999999888888889999987654578888888888777665544332.... PP

           YABBY  98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                        ++    +e+p++p ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
  XP_027106482.1 109 ---MPVRGVDELPKPPVANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 178
                     ...45567889***999******************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MSSSSAFATP DHHHLAAPPT EQLCYVHCNF CDTVLAVSVP CTSLFKTVTV RCGHCTNLLS  60
VNMRGLLLPS ANQLHLGHSF FSPQNLLEEL RNTPPNLLIN QPNPNESLMP VRGVDELPKP  120
PVANRPPEKR QRVPSAYNRF IKDEIQRIKA GNPDISHREA FSAAAKNWAH FPHIHFGLMP  180
DQPVKKSNVC QQEGEDVLMK DGFLAPANVG VSPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.17e-94YABBY family protein