PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027106540.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 325aa    MW: 36884.8 Da    PI: 6.0783
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027106540.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.2e-141863146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W +eEde l++ vk++G+++W++I ++  + Rt+k+c++rw +
   XP_027106540.1 18 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 63
                     79*************************8887799**********87 PP
2Myb_DNA-binding46.67.6e-1574113344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      ++++eE+ + +d+ +q+G++ W++Ia +++ gRt++++k++w
   XP_027106540.1  74 KFSAEEERIVIDLQAQFGNK-WAKIATYLP-GRTDNDVKNFW 113
                      79******************.*********.*********** PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MAGRRERLTC DEMGEIKKGP WKAEEDEVLI NHVKKYGPRD WSSIRSKGLL QRTGKSCRLR  60
WVNKLRPNLK NGVKFSAEEE RIVIDLQAQF GNKWAKIATY LPGRTDNDVK NFWSSRQKRL  120
ARILQTPASS SSSSSNRSQR NKHVPAIHDV PPFEASKFSS SSEEDSLPKS QSCLSLYTVK  180
SLTVEMEMVP LPELMHPNTL NYEQSFLPPE FDLIEKKPCI ETLSQLPFPQ IPNFQSEFAL  240
SLENNEVVTR LGDPNYLEAF GSSISSELGN VQLPIMPTCF ESERRSTQIA AKCEIGNPVT  300
PDSFVDDFPI DIFDHIEPLP SPLDW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.11e-81MYB family protein