PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027106559.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 318aa    MW: 35510 Da    PI: 9.0008
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027106559.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.21.2e-17138190254
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+
  XP_027106559.1 138 RKKLRLSKEQAALLEETFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRAR 190
                     788899**********************************************8 PP
2HD-ZIP_I/II1185.3e-38138233191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRAR......tktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                     +kk+rlskeq++lLEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRAR      tk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr 
  XP_027106559.1 138 RKKLRLSKEQAALLEETFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARtfsccrTKLKQTEVDCEYLKRCCENLTEENRRLQKEVNELR- 231
                     69**************************************************73333336*********************************9. PP

     HD-ZIP_I/II  90 el 91 
                     +l
  XP_027106559.1 232 AL 233
                     55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MGEKDDGLRL SLSLGCGDDE KREKISQSPQ PFPLKLMRST LPFVQQRNQQ QLLLLQKSSF  60
LADAFPSSSE RNAAEPRSSL RGIDVNRPAT VIDCDEEVMV SSPNSTVSSV SGKRSEREEN  120
EAERGSSSLE DDGGDAARKK LRLSKEQAAL LEETFKEHNT LNPKQKLALA KQLNLRPRQV  180
EVWFQNRRAR TFSCCRTKLK QTEVDCEYLK RCCENLTEEN RRLQKEVNEL RALKLSPQFY  240
MNMNPPTTLT MCPQCERVAV SASSSSSAAA ASTSLAATST GIPRQQNPLT GSNQHSMPKN  300
PWAAIFPNQS HGVRQPRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.12e-71HD-ZIP family protein