PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027106883.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 253aa    MW: 28794.1 Da    PI: 9.7421
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027106883.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.3e-1372123154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     ++++h  +ErrRR+++ + ++ Lr llP  +   +++K s ++ L  Av++Ik++
  XP_027106883.1  72 KKANHRDIERRRRQEMAKLYASLRNLLPLeC---KKTKRSISDHLLDAVNHIKHM 123
                     689**************************88...********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MAVHPDLEPA IPHQDLQNQV VASSLASRQE KTEEIIIRNN INTARKRQTK ASSAIRADNH  60
DRGKNPDESK QKKANHRDIE RRRRQEMAKL YASLRNLLPL ECKKTKRSIS DHLLDAVNHI  120
KHMKKNIREL EVKRDKQINL TAGSSNLDVK IVEETNSSAI KFTLRQCSGG GIEILMKNYL  180
ADTKWFPLSK ILDVLLDEGL AVVSCVCTKV NEEFLYTIQT EVNAGVDLIC LQEKLTKNAM  240
TGKDLKVLEQ YRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.18e-35bHLH family protein