PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027107051.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 245aa MW: 27170.2 Da PI: 6.874

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027107051.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00033	51	73	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_027107051.1 51 YQCKTCNRTFPSFQALGGHRASH 73 9***********99999998887 PP
2	zf-C2H2	12.3	0.00051	149	171	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H XP_027107051.1 149 HECSICGAEFASGQALGGHMRRH 171 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MANCLILLAQ GESCRKQVDQ DRESKMEKFT SRRFNEMATT TTGGKVGFFV YQCKTCNRTF 60 PSFQALGGHR ASHKKPKINI EDNKATIVTP SNDHHHHQEE EEEEEEEKES AGEEQAAGQL 120 IGRQSPPLSI QSTNKPCSTA ASNKASKSHE CSICGAEFAS GQALGGHMRR HRNSMTASTS 180 KVATILETSP SIDHHDQKPR NIFPLDLNLP APSEDDVHRD LKFQFSANQQ PHLVFSAPAL 240 VDCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	1e-48	C2H2 family protein