PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027107424.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family Trihelix
Protein Properties Length: 607aa    MW: 68457.1 Da    PI: 7.1312
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027107424.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.78.3e-15126187268
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
                     W+++evlaL+++r++me+++ +       We+vs+k+   g++rs+++Ckek+e+ ++ +  ++ ++
  XP_027107424.1 126 WSNDEVLALLRIRSSMENWFPEI-----TWEHVSRKLTGLGYHRSAEKCKEKFEEESRHFNSMNYNK 187
                     ********************998.....9****************************9998877554 PP
2trihelix93.32.4e-29493582186
        trihelix   1 rWtkqevlaLiearremeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+++ev+aLi+++ ++ +++ ++      +k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+++kkr s +s+tcpyf+ql 
  XP_027107424.1 493 RWPRDEVQALINLKCRLTNNSTSDDsikegAKGPLWERISQGMLELGYKRSSKRCKEKWENINKYFRKTKDNNKKR-SLDSRTCPYFHQLS 582
                     8*************99888888653344559********************************************8.9999********95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    
MFDGVPADQF HQFLAASSRT SLPIPLSFPL HHHGVSIPSS AASVSLASPP LPPTSATPPA  60
PAFLGCFDPY SSPLTLDVQV QPHHHHQQSG LHHQLHHQSP PPTSKNGEEK EEREGSISAA  120
IPLDPWSNDE VLALLRIRSS MENWFPEITW EHVSRKLTGL GYHRSAEKCK EKFEEESRHF  180
NSMNYNKNYR FFSDLDELYN DENPQVSTEK SQDLVKEKDK QEGDNRMDAS TLQEEEDTGN  240
TVAVANPSDQ ENAELVKEST KSRKRKRTHK FEMFKGFCEA VVKKIVEQQE VLHNKLIEDM  300
VRRDRESIAR DEAWKCQEMD RINKEIEMRA QEQAIACDRQ GKIIDLLKKF TSGSEADQSL  360
VRRIEDLLKV TNSSNSVTSS SEILPPSSLN SDQTKLEAVT SASMAISHQN PTLVLSRNNP  420
TSSGETTPSP HNHCSTPQAT SSATLPTTSQ NPNTNSYKYH ENPSQPNPSL AQKSSQKMVS  480
APNERGERIA GKRWPRDEVQ ALINLKCRLT NNSTSDDSIK EGAKGPLWER ISQGMLELGY  540
KRSSKRCKEK WENINKYFRK TKDNNKKRSL DSRTCPYFHQ LSTLYGQGTL VAPSNLPENR  600
QTSPENH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264269KRKRTH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-86Trihelix family protein