PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027107651.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YC
Protein Properties Length: 260aa    MW: 29011.7 Da    PI: 5.3131
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027107651.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC170.42.2e-53751781101
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql+sfw +q   i++ t+fknh+lPlarikki+kadedv+misaeaP+++++ace+fileltlr+w+h+eenkrrtl+k+diaaa++rtd+fdfl
  XP_027107651.1  75 QLQSFWGNQrqeIDRLTEFKNHSLPLARIKKIMKADEDVRMISAEAPIVFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAIARTDVFDFL 169
                     89****999888999******************************************************************************** PP

           NF-YC  93 vdivprdel 101
                     vdi+pr++l
  XP_027107651.1 170 VDIIPREDL 178
                     ******987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MDKQDHSQPQ VSGIVGGMPQ LSYATNVYTG NPGQGSLVTS VVASQPTGQT TGVQIGEQRA  60
YQQIHQQQQQ ELEQQLQSFW GNQRQEIDRL TEFKNHSLPL ARIKKIMKAD EDVRMISAEA  120
PIVFARACEM FILELTLRAW NHTEENKRRT LQKNDIAAAI ARTDVFDFLV DIIPREDLKD  180
EALLAVPRNA MPLGESSGSL PYYYMQPQQM APARPPAPGL PVNTPAIDPT LYGQQPHPYM  240
APHLWSEATA PQQPQSPSDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148154RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.32e-71NF-YC family protein