PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027107709.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 500aa MW: 55214.7 Da PI: 7.8672

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027107709.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.4e-05	65	87	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C k F r nL+ H r H XP_027107709.1 65 FICEICQKGFQRDQNLQLHRRGH 87 89*******************88 PP
2	zf-C2H2	12.9	0.00032	141	163	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H rt+ XP_027107709.1 141 WKCDKCSKKYAVQSDWKAHSRTC 163 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence
MSNISGDDEP FKNYSASTPT NSDGSSIQQQ QAPKDKKKRN PPGNPDPDAE VIALSPKTLM 60 ATKRFICEIC QKGFQRDQNL QLHRRGHNLP WKLRQRTSTE TRKRVYVCPE TCCVHHNPSR 120 ALGDLTGIKK HYSRKHGEKK WKCDKCSKKY AVQSDWKAHS RTCGTREYKC ECGTIFSRRD 180 SFITHRAFCD ALAEENSKIS QVLAANKGGT NIESPEDLET MSTRTFENKL STSMAAPDLS 240 HLDGTISMMK TPPNELMQMS MEPSNIAGLT MFSSTLLGSP RNLSFPTSRP QLSTNSPTVL 300 NGYNDSNSKG HQEASIAQFS ATALMQKAAQ IGSIMRSNIS SPMVQKGFTP NMAPLFYNGT 360 LKYLSDTNIF HQRGTEKVSA SDQLHDPLSN ADESSRMQNL GTNNGLLFNE NLDFLHNNEG 420 ACDADDGDTT INGRNQAGIY ARSLKNSNFM TLDLLGIGGF GHTAFHGMQQ QEMDVEAATT 480 VLEDASCIGY VSATDHSTHN

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence

MSNISGDDEP FKNYSASTPT NSDGSSIQQQ QAPKDKKKRN PPGNPDPDAE VIALSPKTLM  60
ATKRFICEIC QKGFQRDQNL QLHRRGHNLP WKLRQRTSTE TRKRVYVCPE TCCVHHNPSR  120
ALGDLTGIKK HYSRKHGEKK WKCDKCSKKY AVQSDWKAHS RTCGTREYKC ECGTIFSRRD  180
SFITHRAFCD ALAEENSKIS QVLAANKGGT NIESPEDLET MSTRTFENKL STSMAAPDLS  240
HLDGTISMMK TPPNELMQMS MEPSNIAGLT MFSSTLLGSP RNLSFPTSRP QLSTNSPTVL  300
NGYNDSNSKG HQEASIAQFS ATALMQKAAQ IGSIMRSNIS SPMVQKGFTP NMAPLFYNGT  360
LKYLSDTNIF HQRGTEKVSA SDQLHDPLSN ADESSRMQNL GTNNGLLFNE NLDFLHNNEG  420
ACDADDGDTT INGRNQAGIY ARSLKNSNFM TLDLLGIGGF GHTAFHGMQQ QEMDVEAATT  480
VLEDASCIGY VSATDHSTHN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	2e-98	C2H2 family protein