PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027107780.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 842aa    MW: 92442.5 Da    PI: 6.1095
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027107780.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.7e-182785357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_027107780.1 27 KYVRYTAEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 85
                    56789****************************************************97 PP
2START156.91.6e-491673752205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+ +v  +++   +e+l+d++ W +++++ e+      g  g+++l 
  XP_027107780.1 167 IAEETLTEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISHSCSGVAARACXLVSLEPT-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIELV 260
                     789*******************************************************.7777777777***********999999999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++ +a+++l+p Rdf+++Ry+ +l+ g++v++++S++ +   p+    s++ Rae+lpSg+li+p+++g+s +++v+h +l++++++++lr+l+
  XP_027107780.1 261 YTQIYAPTTLAPaRDFWTLRYTTTLENGSLVVCERSLSGTGAGPNaaaASQFTRAEMLPSGYLIRPCDGGGSIIHIVDHLNLEAWSVPEVLRPLY 355
                     ******************************************9999999********************************************** PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s+ + ++k++ a+l++ ++
  XP_027107780.1 356 ESSKVVAQKMTIAALRYVRQ 375
                     ***************98765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    
MAMVAQQHRE SSSGSISKQN SSIDSGKYVR YTAEQVEALE RVYTECPKPS SLRRQQLIRE  60
CPILSNIEPK QIKVWFQNRR CREKQRKESS RLQTVNRKLT AMNKLLMEEN DRLQKQVSQL  120
VCENGYMRQQ LQTASAATTT DAVCESVVTT PRHSLRDANN PAGLLSIAEE TLTEFLSKAT  180
GTAVDWVQMP GMKPGPDSVG IFAISHSCSG VAARACXLVS LEPTKIAEIL KDRPSWFRDC  240
RSLEVFTMFP AGNGGTIELV YTQIYAPTTL APARDFWTLR YTTTLENGSL VVCERSLSGT  300
GAGPNAAAAS QFTRAEMLPS GYLIRPCDGG GSIIHIVDHL NLEAWSVPEV LRPLYESSKV  360
VAQKMTIAAL RYVRQIAQET SGEVVYGLGR QPAVLRTFSQ RLSRGFNDAI NXFNDDGWSL  420
LSCDGAEDVI IAVNSTKSLS TSSNSLSVIG GILCAKASML LQNVPPAVLV RFLREHRSEW  480
ADFNIDAYSA ASLKAGSYAY PGMRPTRFTG SQIIMPLGHT IEHEEMLEVI RLEGHSLGQE  540
DAFMSRDIHL LQMCSGVDEN AIGXCSELVF APIDEMFPDD ALLPXGFRII PLESKSGDAH  600
DTLPTNRTLD LTSSLEVGPA SATTAADASS CYNARSVLTI AFQFPFENNL QENVATMARQ  660
YLRSVISSVQ RVAMAISPSG VSPTVGPKLS PGSPEALTLA HWICQSYSYH MGAELLRADP  720
LNGDTVLKNL WLHQDAILCC SLKSLPVFIF ANQAGLDMLE TTLVALQDVT LDKIFDDTGR  780
KALFAEFAKI MQQGFAYLPG GICMSTMGRH VSYEQAIAWK VLAPDENTVH CLAFTFVNWS  840
FV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein