PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027107947.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TALE

Protein Properties

Length: 324aa MW: 36193.5 Da PI: 4.7588

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027107947.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.1	1.7e-09	253	285	23	55
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++ee+ +L++ +gL+++q+ +WF N+R ++ XP_027107947.1 253 PYPTEEEKNKLSEATGLDQKQINNWFINQRKRH 285 8*****************************885 PP
2	ELK	38.8	2e-13	205	226	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++L+rKYsgyL+sL++EF+ XP_027107947.1 205 ELKEMLMRKYSGYLSSLRKEFL 226 9********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence
MDELYRIHTS FSCPDGGAVE VGSMRGLDRS SPVENLVQFR PGENSHDEVI GSEMSDLLKI 60 QIASHHLYPN LVSAYVECRK VGAPPEMASL LEEISKASRP ISSPSGISAD PELDQFMESY 120 CEALHRYKEE LLKPFDEATT FLSNIELELN NLCKENFTTT TSSSMTSTNY YSDEAGVTSD 180 EDLSCGEVEV AESQESSAAG QGESELKEML MRKYSGYLSS LRKEFLKKRK KGKLPKDARI 240 ALLDWWNTHY RWPYPTEEEK NKLSEATGLD QKQINNWFIN QRKRHWKPSE DMRFALMQGV 300 SAGTPSPGGP ICFDTAGGNG GFGI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	221	230	LRKEFLKKRK
2	227	231	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.1	3e-70	TALE family protein