PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027108036.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 522aa MW: 56683.1 Da PI: 9.4458

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027108036.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_027108036.1 69 FICEICNKGFQRDQNLQLHRRGH 91 89*******************88 PP
2	zf-C2H2	11.8	0.00074	145	167	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + XP_027108036.1 145 WKCEKCSKKYAVQSDWKAHSKIC 167 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence
MMSDEGLASS LRGFIQDPNP NLPNPNPNNS NPNPNSNTAK RKRNLPGTPD PDAEVVALSP 60 KSLMATNRFI CEICNKGFQR DQNLQLHRRG HNLPWKLKQR TNKEVKKKVY ICPEKTCVHH 120 DPSRALGDLT GIKKHFSRKH GEKKWKCEKC SKKYAVQSDW KAHSKICGTR EYKCDCGTLF 180 SRKDSFITHR AFCDALAEES ARFAPIPSAN LNFRNELFNG GLSSLQPAGN PQFSNSIAGL 240 DPATGQLNLN GQKPRLPLWL DNANTQLNNP IGNHPGNSNA FLASSSTSLP ELVQMTPTNM 300 LGLSSQNQWF NIGGNASSSG LPRVLKEEEE NRGNLSDHIS SLYYNNGQNS SQHETAPAHM 360 SATALLQKAA QMGSTRSNSA IFGTGFGLMS SSLSSLSNFN SLNQSRNELQ NFGQAENLNG 420 LMTSTSQSTI TTNQGDGLLL GNMSSSNNLV GNLRHPSAPP TIMPGSTDRG GSQSKSSGNE 480 AEGGLTRDFL GVGGNESRPF LQQNELVKFA SSMSSAMDFG NQ

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence

MMSDEGLASS LRGFIQDPNP NLPNPNPNNS NPNPNSNTAK RKRNLPGTPD PDAEVVALSP  60
KSLMATNRFI CEICNKGFQR DQNLQLHRRG HNLPWKLKQR TNKEVKKKVY ICPEKTCVHH  120
DPSRALGDLT GIKKHFSRKH GEKKWKCEKC SKKYAVQSDW KAHSKICGTR EYKCDCGTLF  180
SRKDSFITHR AFCDALAEES ARFAPIPSAN LNFRNELFNG GLSSLQPAGN PQFSNSIAGL  240
DPATGQLNLN GQKPRLPLWL DNANTQLNNP IGNHPGNSNA FLASSSTSLP ELVQMTPTNM  300
LGLSSQNQWF NIGGNASSSG LPRVLKEEEE NRGNLSDHIS SLYYNNGQNS SQHETAPAHM  360
SATALLQKAA QMGSTRSNSA IFGTGFGLMS SSLSSLSNFN SLNQSRNELQ NFGQAENLNG  420
LMTSTSQSTI TTNQGDGLLL GNMSSSNNLV GNLRHPSAPP TIMPGSTDRG GSQSKSSGNE  480
AEGGLTRDFL GVGGNESRPF LQQNELVKFA SSMSSAMDFG NQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-111	C2H2 family protein