PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027108150.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 201aa MW: 21591.7 Da PI: 8.1554

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027108150.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.5	5.2e-39	11	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC k+C++apyf eq +++fa+vhk+FGasn +k+l ++p ++r da+ +l+yeA ar+rdPvyG+vg++++lqqq+ +l+ael XP_027108150.1 11 PCGACKFLRRKCLKGCIFAPYFDPEQgTANFAAVHKVFGASNASKMLLRVPAHKRLDAVVTLCYEALARIRDPVYGCVGHLFTLQQQVVNLQAEL 105 7*******************666659***************************************************************** PP DUF260 95 allkee 100 a ++++ XP_027108150.1 106 ACAQAR 111 *99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence
MSGTGHNGSG PCGACKFLRR KCLKGCIFAP YFDPEQGTAN FAAVHKVFGA SNASKMLLRV 60 PAHKRLDAVV TLCYEALARI RDPVYGCVGH LFTLQQQVVN LQAELACAQA RLSTLQRLPS 120 MLPPPAQGPS PGNFQSCTAN ASSIHNLEPP LPSEQTSMDM EGFSNPVNDR DLGGGDDLHA 180 FAQGFVSRYL PEVKFKPCTS P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45410.1	5e-72	LBD family protein