PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027108151.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family LBD
Protein Properties Length: 196aa    MW: 21038.1 Da    PI: 8.1554
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027108151.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.41.7e-3611106195
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC k+C++apyf  eq +++fa+vhk+FGasn +k+l ++p ++r da+ +l+yeA ar+rdPvyG+vg++++lqqq e + a++
  XP_027108151.1  11 PCGACKFLRRKCLKGCIFAPYFDPEQgTANFAAVHKVFGASNASKMLLRVPAHKRLDAVVTLCYEALARIRDPVYGCVGHLFTLQQQAELACAQA 105
                     7*********************666659**********************************************************988776655 PP

          DUF260  95 a 95 
                      
  XP_027108151.1 106 R 106
                     4 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MSGTGHNGSG PCGACKFLRR KCLKGCIFAP YFDPEQGTAN FAAVHKVFGA SNASKMLLRV  60
PAHKRLDAVV TLCYEALARI RDPVYGCVGH LFTLQQQAEL ACAQARLSTL QRLPSMLPPP  120
AQGPSPGNFQ SCTANASSIH NLEPPLPSEQ TSMDMEGFSN PVNDRDLGGG DDLHAFAQGF  180
VSRYLPEVKF KPCTSP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.12e-57LBD family protein