PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027108261.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 830aa    MW: 90045.4 Da    PI: 6.4236
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027108261.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.14.7e-21125180156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  XP_027108261.1 125 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 180
                     688999***********************************************999 PP
2START203.77.8e-643385651206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela++a++elvk+a+ +ep+W +s     e++n +e++++f++  +     + +ea+r++g+v+ ++  lve+l+d + +W e+++    + +t+
  XP_027108261.1 338 ELALAAMNELVKLAQTDEPLWLRSLeggrEILNHEEYMRTFTPCIGvkptgFVTEASRETGMVIINSLALVETLMDAN-KWAEMFPcmiaRTSTT 431
                     5899**************************************99889*******************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwv 167
                     +vis g      galqlm  elq+lsplvp R++ f+R+++q+ +g+w++vdvSvds ++ +    s+ + R+++lpSg+l+e+++ng+skvtwv
  XP_027108261.1 432 DVISGGmggtrnGALQLMHGELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSVDSIRETSGggaSPTFPRSRRLPSGCLVEDMPNGYSKVTWV 526
                     ************************************************************999999***************************** PP

                     E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     eh+d++++++h+l+r+l++ g+ +g ++w atlqrqce+
  XP_027108261.1 527 EHADYDESMIHQLYRPLIGAGMGFGSQRWIATLQRQCEC 565
                     *************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 830 aa     Download sequence    
MNFGGFLDNN SVGGGGAKIV ADIPYSDSNN VNSSNTNMPA SAAIAQPRLA TQSLSKSMFS  60
SPGLSLALQT SLEGQEVRRM SENYESNMNF GRRSRDEEHE SRSGSDNMEG GSGDDQEAAD  120
KPPRKKRYHR HTPQQIQELE ALFKECPHPD EKQRLELSKR LCLETRQVKF WFQNRRTQMK  180
TQLERHENSI LRQENDKLRA ENMSIREAMR NPICTNCGGP AIIGEVSLEE QHLRIENARL  240
KDELDRVCTL AGKFLGRPIS SSAASMAPPL PNSSLELGVG GNGFASLSTV PATLPLGPPD  300
FGVGIGNPLS VMAGPTKAAA TTGGTGIERS LEKSMYLELA LAAMNELVKL AQTDEPLWLR  360
SLEGGREILN HEEYMRTFTP CIGVKPTGFV TEASRETGMV IINSLALVET LMDANKWAEM  420
FPCMIARTST TDVISGGMGG TRNGALQLMH GELQVLSPLV PVREVNFLRF CKQHAEGVWA  480
VVDVSVDSIR ETSGGGASPT FPRSRRLPSG CLVEDMPNGY SKVTWVEHAD YDESMIHQLY  540
RPLIGAGMGF GSQRWIATLQ RQCECLAILM SSSVAPRDHT AITASGRRSM LKLAQRMTDN  600
FCAGVCASTV HKWNKLCAGN VDEDVRVMTR KSVDDPGEPP GIVLSAATSV WLPVSPQRLF  660
DFLRDERLRS EWDILSNGGP MQEMAHIAKG QDHGNCVSLL RASAMNANQS SMLILQETCI  720
DAAGSLVVYA PVDIPAMHVV MNGGDSAYVA LLPSGFAIVP DGPGSRGPLP NGLTNGPTSH  780
RVSGSLLTVA FQILVNSLPT AKLTVESVET VNNLISCTVQ KIKAALHCES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein