PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027108382.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 555aa MW: 62910.6 Da PI: 7.4044

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027108382.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.7	5.3e-08	458	506	2	47
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 ++WT+eE++++ + vk + W+ I + ++ +R++++++s+++++ XP_027108382.1 458 LSWTKEEEKKFHNIVKSNPLSlgkcFWHEIVKAFP-NRSRESLVSYYFNV 506 58************877667777******.*********995 PP

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence
MLGNGQSVDL FKVYLNVRDR GGLEKVSKTG QWGSVALECG VDSSSASALK LVYVKYLDTL 60 DKSLQRVVRG ESSERGANES GLDILKELLM DLESDLKGFL SGIVDNKKKD GEVMSVELKK 120 KEFDFESGGK FARLDEVGGL VKLNGDAEDG DKTSAADDGG ECGFVSFDVE EKPDGVDNLF 180 EVGIREERRM EDGDTQLDSS SRKEDLVRRK RRRESYLSML KWINRVARDP CDPAIGFLPD 240 KSKWKYYAND LVWKQALLVR EAMMSKRNSE SSDQHSILQK KQKMHPVLYD DQVGSERQRF 300 SQRLLSAKDP SKKSRARNFS ESCSSGTQSD EEFNDTQSDS SSDSEADFVG SRRHRKKRIP 360 LGPQFQADVP EWTGKACESD SKWLGTQYWP LVRVEQNRNL IERERIGKGR LDSCGCQIPG 420 SLECVRFHVS EKRTRVKLEL GPAFYRWKFD NMGEDVALSW TKEEEKKFHN IVKSNPLSLG 480 KCFWHEIVKA FPNRSRESLV SYYFNVCLLH RRGYQNRVTP TDINSDDDES ESSYGSAKPP 540 GSIFCSPKKP HLNIG

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence

MLGNGQSVDL FKVYLNVRDR GGLEKVSKTG QWGSVALECG VDSSSASALK LVYVKYLDTL  60
DKSLQRVVRG ESSERGANES GLDILKELLM DLESDLKGFL SGIVDNKKKD GEVMSVELKK  120
KEFDFESGGK FARLDEVGGL VKLNGDAEDG DKTSAADDGG ECGFVSFDVE EKPDGVDNLF  180
EVGIREERRM EDGDTQLDSS SRKEDLVRRK RRRESYLSML KWINRVARDP CDPAIGFLPD  240
KSKWKYYAND LVWKQALLVR EAMMSKRNSE SSDQHSILQK KQKMHPVLYD DQVGSERQRF  300
SQRLLSAKDP SKKSRARNFS ESCSSGTQSD EEFNDTQSDS SSDSEADFVG SRRHRKKRIP  360
LGPQFQADVP EWTGKACESD SKWLGTQYWP LVRVEQNRNL IERERIGKGR LDSCGCQIPG  420
SLECVRFHVS EKRTRVKLEL GPAFYRWKFD NMGEDVALSW TKEEEKKFHN IVKSNPLSLG  480
KCFWHEIVKA FPNRSRESLV SYYFNVCLLH RRGYQNRVTP TDINSDDDES ESSYGSAKPP  540
GSIFCSPKKP HLNIG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	209	213	RKRRR