PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027108767.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family LBD
Protein Properties Length: 305aa    MW: 33875.6 Da    PI: 7.1007
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027108767.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26085.95.5e-2741128187
          DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                     aC+aCk++r+kC+k+ C++ ++fpae++  f +vhk+FG+snv+k++k l+++e+e+a++sl +eA  + +d v+G +g++++l++q 
  XP_027108767.1  41 ACSACKHQRKKCKKEeCPMLKHFPAEKADIFSAVHKVFGVSNVSKIIKVLEPHEQERAVESLEWEALGWKKDKVHGPLGMYKSLEEQN 128
                     7***********9877********************************************************************9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MLGMLDDDDN NSNNNNTTSN EDDNNKNNDK DNNVEVGNRP ACSACKHQRK KCKKEECPML  60
KHFPAEKADI FSAVHKVFGV SNVSKIIKVL EPHEQERAVE SLEWEALGWK KDKVHGPLGM  120
YKSLEEQNLL IIEKNQKLFE QNQKLQEENR SLKEGLRSMQ QSPTENCSNN AGVLAVQPGA  180
GNVMNYYHGS GSLSLEPGIT NAAQVSAARF LQDQRGREVL PIAAAAPYYD VNHAQAVLAN  240
MGSHHAGQSS RAGYSLANGL YSHYSTTHPS IDRRSSNQVM PLFGYPSPQQ LQFINSGQRN  300
TPDNR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.17e-23LBD family protein