PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027108891.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 266aa MW: 30450.1 Da PI: 7.8628

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027108891.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.6	9e-16	8	55	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lv +v+ +G ++W+ I++ g++Rt+k+c++rw +yl XP_027108891.1 8 KGPWTEQEDVQLVLCVNVYGDRRWDFISKVSGLKRTGKSCRLRWVNYL 55 79********************************************97 PP
2	Myb_DNA-binding	53.4	6e-17	61	106	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++ XP_027108891.1 61 RGKMTPHEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 106 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence
MVQEEIRKGP WTEQEDVQLV LCVNVYGDRR WDFISKVSGL KRTGKSCRLR WVNYLHPGLK 60 RGKMTPHEER LVLELHSKWG NRWSRIARKL PGRTDNEIKN YWRTHMRKKA QERKKAAISP 120 SSSSSSSSPS FSNCSSSISN GNSPSMESGP ITETKERSFY DTGGLEMLTA KGNKTGQAEE 180 ERLQKVYSMD EIWKDIEFSD SDAIQPVYDG YGEGGCNFSS QTMASPVRDY CPVSLWMMDE 240 DESKMFPPIS DQFYSFYNQE STILTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59780.3	3e-84	MYB family protein