PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027109018.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 428aa MW: 49873.1 Da PI: 9.3993

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027109018.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.7	9.2e-19	55	145	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY ++k+vGF +r + +kk ++g +t +++vC++eg+r+++ + +++++ + tr+gC a++ v+ +k +k+ +++++ +HnH+la XP_027109018.1 55 EFYLCHSKMVGFGLRERDEKKD-QKGIVTYKRWVCNREGFRNSKWLNlVDRKKKAKRLTRVGCLATIIVQWNKdIQKFTIKRFNMDHNHQLA 145 69************999887.7777************99887788899999*********99989*************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MEEMTVHINE LVELSNKSAK LGGGISWRTI VDRLDKLSSY EIQLLTFDSI EDAREFYLCH 60 SKMVGFGLRE RDEKKDQKGI VTYKRWVCNR EGFRNSKWLN LVDRKKKAKR LTRVGCLATI 120 IVQWNKDIQK FTIKRFNMDH NHQLANQEFV QFLRSHRSVN PADLEHVILM HGVGIRIPQI 180 VDLQAYQAGG HNKMGYTEKD LRNAVDQFHR NALEVGDASQ VLAYLDGRAN GEPNFFYKYA 240 VDVEKRLIRL FWTNSQSRLD YQYFGDVLVF YSTYRTNAYR KPLVILAGVN HHSVTTIFGC 300 ALIADETEDT YKWVLETFLE AMEKKAPISV VTDGDGAMRN AIKAVIPYAR HRLCAWHLKR 360 NVVTNTNKGF VLDFGVAMDM ICSHEEFERR WHLLVEKHNL RDNQWVVDLY NKREKWAAAF 420 LRGHFFAG

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MEEMTVHINE LVELSNKSAK LGGGISWRTI VDRLDKLSSY EIQLLTFDSI EDAREFYLCH  60
SKMVGFGLRE RDEKKDQKGI VTYKRWVCNR EGFRNSKWLN LVDRKKKAKR LTRVGCLATI  120
IVQWNKDIQK FTIKRFNMDH NHQLANQEFV QFLRSHRSVN PADLEHVILM HGVGIRIPQI  180
VDLQAYQAGG HNKMGYTEKD LRNAVDQFHR NALEVGDASQ VLAYLDGRAN GEPNFFYKYA  240
VDVEKRLIRL FWTNSQSRLD YQYFGDVLVF YSTYRTNAYR KPLVILAGVN HHSVTTIFGC  300
ALIADETEDT YKWVLETFLE AMEKKAPISV VTDGDGAMRN AIKAVIPYAR HRLCAWHLKR  360
NVVTNTNKGF VLDFGVAMDM ICSHEEFERR WHLLVEKHNL RDNQWVVDLY NKREKWAAAF  420
LRGHFFAG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	111	DRKKKAKRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-77	FAR1 family protein