PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027109039.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 528aa MW: 61665.3 Da PI: 9.6853

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027109039.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.3	1.1e-22	26	113	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfYn+YA ++GFsvrk++ +k ++g + r++ C+keg +++ + + + +rtra t++gC ak+++ + + + k++v++l+leHnHel XP_027109039.1 26 KFYNKYAFKMGFSVRKDYPNKD-KDGVTAFRRYSCYKEGVKRKYEGD-VMPKRTRAPTKIGCGAKMVIMLFRgTMKYRVHDLVLEHNHEL 113 6***************9998.8899************9999.999***************999**************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence
MDCNKLTEDG TPELGMEFNS EEDAYKFYNK YAFKMGFSVR KDYPNKDKDG VTAFRRYSCY 60 KEGVKRKYEG DVMPKRTRAP TKIGCGAKMV IMLFRGTMKY RVHDLVLEHN HELHIAQCAH 120 MMPSQRKVSK AQGFQAEISE DVGLSLKQSH ELMEKEAGGM ENVGYTREDL KRYLRTRRER 180 SLKYGEAETM CGKRPSTILT DQDHAMAAAL SVVMPETFHG LCTFHIRRNF MKYLGNHYKK 240 NSDLPYMFGA CMYGFEEMEQ FNRVWEAMVK KHNLENNEWL SELYRIRDKW ARCMMKERWT 300 AGMRSTQLSE SLNTAIKNHL KLDHDLVQFF RHFNRVVDEK RHNELIAEYE MRQKLPMVRL 360 RQTPMLVHAS ETYSPTVFVA FKNEYGESTV MVILRQQDAA MIVEFAIMSY DGGSEKIVVF 420 NRNDLSVRCS CKKYENEGIL CGHALKVFDT VGIKIIPPEY IKRRWTKRAR AGDCFDRRRR 480 EVVADPKIMI STRYRELAPA MIKVATRAAM SEDTSKKAKS NLCKIKKI

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence

MDCNKLTEDG TPELGMEFNS EEDAYKFYNK YAFKMGFSVR KDYPNKDKDG VTAFRRYSCY  60
KEGVKRKYEG DVMPKRTRAP TKIGCGAKMV IMLFRGTMKY RVHDLVLEHN HELHIAQCAH  120
MMPSQRKVSK AQGFQAEISE DVGLSLKQSH ELMEKEAGGM ENVGYTREDL KRYLRTRRER  180
SLKYGEAETM CGKRPSTILT DQDHAMAAAL SVVMPETFHG LCTFHIRRNF MKYLGNHYKK  240
NSDLPYMFGA CMYGFEEMEQ FNRVWEAMVK KHNLENNEWL SELYRIRDKW ARCMMKERWT  300
AGMRSTQLSE SLNTAIKNHL KLDHDLVQFF RHFNRVVDEK RHNELIAEYE MRQKLPMVRL  360
RQTPMLVHAS ETYSPTVFVA FKNEYGESTV MVILRQQDAA MIVEFAIMSY DGGSEKIVVF  420
NRNDLSVRCS CKKYENEGIL CGHALKVFDT VGIKIIPPEY IKRRWTKRAR AGDCFDRRRR  480
EVVADPKIMI STRYRELAPA MIKVATRAAM SEDTSKKAKS NLCKIKKI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	462	480	KRRWTKRARAGDCFDRRRR
2	476	481	DRRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-41	FAR1 family protein