PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027109046.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 255aa    MW: 29258.2 Da    PI: 6.2851
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027109046.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.47.9e-1190142155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +r+ h  +Er+RR ++ +  + Lr llP+      ++K s ++ + +A++YIk+++
  XP_027109046.1  90 KRAFHRDIERQRRLEMANLHASLRNLLPSeY---IKGKRSMSDHVLEAINYIKHME 142
                     7999*************************77...********************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MDDFTKYMFP LQHDEILSFA PIPIIHPYLD PTIHHQDLEN QGASSLASHQ QNTEEIVINN  60
HVNKAWKSQR KPASAIRDDQ NVKGRNPEQK RAFHRDIERQ RRLEMANLHA SLRNLLPSEY  120
IKGKRSMSDH VLEAINYIKH MEKNIGELEV KRDKLRNLTG ESSNLDSKRV NETNSLSITF  180
TVEPCSGGGF EILMKNYLTD NNWLPLSRIL DVLLDEGITV VNCVCTKVNE ECLYTIQTEA  240
THMSDVDLIS LQVLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
190102KRAFHRDIERQRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.12e-36bHLH family protein