PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027109202.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WOX

Protein Properties

Length: 395aa MW: 43419.2 Da PI: 7.9967

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027109202.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.7	1.7e-17	55	115	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++ +eq+++Le+ F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ XP_027109202.1 55 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKH 115 89***************99***********************************995 PP
2	Wus_type_Homeobox	111.7	3.9e-36	54	117	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++kq XP_027109202.1 54 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKQ 117 689***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MASSNRHWPS MFKSKPCNSQ HQWQHEINSS LISNGCQRAP SCASSGSEER SPEPKPRWNP 60 RPEQIRILEA IFNSGMVNPP RDEIRKIRAQ LQEYGQVGDA NVFYWFQNRK SRSKHKQRHF 120 QSTTKSQPPQ IPHITSTPPA TKTTSLSSSS SSSERSSQNS ADKTLSLGPK NLLDTSSSAT 180 ASVNQHFFQS HSAEFLPVPF FFPVQQPPSA AESTPPAAFS QGFCFSDAPS LSHLADNTIQ 240 NSSSLLLSDL LLMNHVPTKK VQDEKIKLQQ QLNYTALTTP PITTSQSIFS PTSVAAVSSI 300 DHVHGVGETG SADPTKSTVF INDVAFEVTS AFFNVREAFG DDAVLVHSSG QPVLTNEWGV 360 TLQPLQHGAF YYLIRTSTSS SHDTTIDLIY PTRGC

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MASSNRHWPS MFKSKPCNSQ HQWQHEINSS LISNGCQRAP SCASSGSEER SPEPKPRWNP  60
RPEQIRILEA IFNSGMVNPP RDEIRKIRAQ LQEYGQVGDA NVFYWFQNRK SRSKHKQRHF  120
QSTTKSQPPQ IPHITSTPPA TKTTSLSSSS SSSERSSQNS ADKTLSLGPK NLLDTSSSAT  180
ASVNQHFFQS HSAEFLPVPF FFPVQQPPSA AESTPPAAFS QGFCFSDAPS LSHLADNTIQ  240
NSSSLLLSDL LLMNHVPTKK VQDEKIKLQQ QLNYTALTTP PITTSQSIFS PTSVAAVSSI  300
DHVHGVGETG SADPTKSTVF INDVAFEVTS AFFNVREAFG DDAVLVHSSG QPVLTNEWGV  360
TLQPLQHGAF YYLIRTSTSS SHDTTIDLIY PTRGC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	4e-61	WOX family protein