PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027109310.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 698aa MW: 77218.6 Da PI: 8.7517

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027109310.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.5	1.2e-07	597	646	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ XP_027109310.1 597 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 646 678999******************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence
MVLQKRLDYG FNGYQVPPTP RAARSARRRG INRRITDDSQ MCAFDLLATX AGKLLLEGES 60 SPSSTDMGSS GKDQYEASKS LAKEGMLEEN KHVSNFSNQD CSDRSFIVSE LVLQAPSLNN 120 CPKELAHTQN DXLSGPTSAI TTSECSEKVG SAERLLSDQS NFQHGKADIE LFGCRVSPGC 180 KLDGEKKRQI KVEPNDLKLS ICARDDICNS ESPXAWDRKP SCLVSSDESV KSLSRDHIPS 240 GSLPTXRENV NLVTRDDDEN SSGCTQPSTV NNAFRPSSHI GDRRIRKLLA SKYWKVTPNL 300 KDGEHFKTVM SSDADMKYVH HDGKNGFKRQ RSQRDFPFKK RKLYHCSSLS NLDGDICTDE 360 MYNSPGKFSN RDACASMLPK VTGPSISGAS EHAAFKSKDS QVKLKIKSFR VPEFFIEIPE 420 TATVGSLKKT VMEAVTAILS GELRVGVXLQ GKKIRDDNKT LLQTGISHDN KLDALGFTLE 480 PNLSQAPPPV SLEDHPFLLS CDSPQPLSRY PPTPSTTANA ALLRGTSDAS PDPPGTNLSN 540 LVESDHDSAP XPPEMSLEKS TVDSRALVAV PAMNVEALSV VPMRKSKRSE AAQRRIRRPF 600 SVSEVEALVQ AVEKLGTGRW RDVKLRAFDN AKHRTYVDLK DKWKTLVHTA RISPQQRRGE 660 PVPQELLDRV LTAHAYWSQQ QVKPQFKQQS EACRLLST

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence

MVLQKRLDYG FNGYQVPPTP RAARSARRRG INRRITDDSQ MCAFDLLATX AGKLLLEGES  60
SPSSTDMGSS GKDQYEASKS LAKEGMLEEN KHVSNFSNQD CSDRSFIVSE LVLQAPSLNN  120
CPKELAHTQN DXLSGPTSAI TTSECSEKVG SAERLLSDQS NFQHGKADIE LFGCRVSPGC  180
KLDGEKKRQI KVEPNDLKLS ICARDDICNS ESPXAWDRKP SCLVSSDESV KSLSRDHIPS  240
GSLPTXRENV NLVTRDDDEN SSGCTQPSTV NNAFRPSSHI GDRRIRKLLA SKYWKVTPNL  300
KDGEHFKTVM SSDADMKYVH HDGKNGFKRQ RSQRDFPFKK RKLYHCSSLS NLDGDICTDE  360
MYNSPGKFSN RDACASMLPK VTGPSISGAS EHAAFKSKDS QVKLKIKSFR VPEFFIEIPE  420
TATVGSLKKT VMEAVTAILS GELRVGVXLQ GKKIRDDNKT LLQTGISHDN KLDALGFTLE  480
PNLSQAPPPV SLEDHPFLLS CDSPQPLSRY PPTPSTTANA ALLRGTSDAS PDPPGTNLSN  540
LVESDHDSAP XPPEMSLEKS TVDSRALVAV PAMNVEALSV VPMRKSKRSE AAQRRIRRPF  600
SVSEVEALVQ AVEKLGTGRW RDVKLRAFDN AKHRTYVDLK DKWKTLVHTA RISPQQRRGE  660
PVPQELLDRV LTAHAYWSQQ QVKPQFKQQS EACRLLST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	282	288	DRRIRKL
2	328	343	KRQRSQRDFPFKKRKL
3	333	342	QRDFPFKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-154	MYB_related family protein