PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027109366.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ARR-B

Protein Properties

Length: 356aa MW: 40454.1 Da PI: 10.1698

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027109366.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	68.1	1.4e-21	236	286	3	54
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 +++Wt+eLH++Fv+a++qL G+ + P+ il lm+v+gLt+ +v+SHLQk R XP_027109366.1 236 KRVWTSELHAKFVDAINQL-GEGRCFPSDILALMNVPGLTRMQVASHLQKCR 286 679**************.9***************************98 PP
2	Myb_DNA-binding	38.9	2e-12	237	285	2	47
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqky 47 WT e++ ++vda++qlG g ++ I + m+ g+t+ q+ s++qk XP_027109366.1 237 RVWTSELHAKFVDAINQLGEGrcFPSDILALMNvPGLTRMQVASHLQKC 285 57*********************************************97 PP
3	Response_reg	22.6	5.1e-09	60	150	14	105
HHHHHHHTTCEEEEEESSHHHHHHHHHHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HH CS Response_reg 14 lrqalekegyeevaeaddgeealellkekd.pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpe 105 l+++le+ + v ++ ++ al +l + + +D++++ + p++ ++ll e ++ +++ +i++++++++ a +al++Ga + Kp + e XP_027109366.1 60 LEEMLEELLTSGVSRVELASTALMMLSNGWkFDVVMTNVHSPELLTMKLLDEAAK--MNILVILMSDFEDPFIARRALERGAFLYAKKPASLE 150 5666665555566777777888888888888**********988888877665..66****************************6544 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MTKGHWDGGG EERRRGGRRG GGRGNWGRRR RRKGKVRRGK REEEEKENRG GERVALAPVL 60 EEMLEELLTS GVSRVELAST ALMMLSNGWK FDVVMTNVHS PELLTMKLLD EAAKMNILVI 120 LMSDFEDPFI ARRALERGAF LYAKKPASLE LVKCLWQYVV RERKQKGKEK ENVQKKNESD 180 RKNISELLDE TPEKNSAPEN GMQEKGKGKA EVIINGQEVM NGELGDLPNF TDSLGKRVWT 240 SELHAKFVDA INQLGEGRCF PSDILALMNV PGLTRMQVAS HLQKCRRNSW RDPCDRKRHS 300 SASEHTSHDD ETQEKIPPKR RFGSMPCGEN RSKRTPEPAQ AFEGVQSLKL KNPRIE

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MTKGHWDGGG EERRRGGRRG GGRGNWGRRR RRKGKVRRGK REEEEKENRG GERVALAPVL  60
EEMLEELLTS GVSRVELAST ALMMLSNGWK FDVVMTNVHS PELLTMKLLD EAAKMNILVI  120
LMSDFEDPFI ARRALERGAF LYAKKPASLE LVKCLWQYVV RERKQKGKEK ENVQKKNESD  180
RKNISELLDE TPEKNSAPEN GMQEKGKGKA EVIINGQEVM NGELGDLPNF TDSLGKRVWT  240
SELHAKFVDA INQLGEGRCF PSDILALMNV PGLTRMQVAS HLQKCRRNSW RDPCDRKRHS  300
SASEHTSHDD ETQEKIPPKR RFGSMPCGEN RSKRTPEPAQ AFEGVQSLKL KNPRIE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	13	33	RRRGGRRGGGRGNWGRRRRRK
2	15	23	RGGRRGGGR
3	16	22	GGRRGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	2e-29	ARR-B family protein