PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027109367.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 587aa MW: 67860.9 Da PI: 9.2051

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027109367.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	35	4.7e-11	1	77	9	85
FAR1 9 evGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +vGF +r + +kk ++g +t +++vC++eg+r+++ + +++++ + tr+gC a++ v+ +kd + v+ +leH XP_027109367.1 1 MVGFGIRERDEKKD-QKGIVTYKRWVCNREGFRNSKWLNlVDRKKEAKRLTRVGCLATIIVQWNKDIQKGVNPADLEH 77 58****998887.7777************99986778888999*************99999999999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence
MVGFGIRERD EKKDQKGIVT YKRWVCNREG FRNSKWLNLV DRKKEAKRLT RVGCLATIIV 60 QWNKDIQKGV NPADLEHAIL MHGVGIRIPQ IVDLQAYQAG GHNKMGYTEK DLRNVVDQFH 120 RNALEVGDAS QVLAYLDGRA NGEPNFFYKY AVDVEKRLIR LFWTDSQSRL DYQYFGDVLV 180 FDSTYRTNAY RKPLVILAGV NHHYVTTIFG CALIADETED TYKWVLETFL EAMEKNAPIS 240 VVTDRDGAMR NAIKAVIPYT RHRLYAWHLK RNVVTNTNKG FVLDFGVAMD MICSHEEFEK 300 RWHLLVEKHN LRDNQWVVDL YNKREKWVAA FLRGHFFAVG QNEHKEECIM SQSSPVLITH 360 LRELEGNAAS IFTRKIFLKV RDEISAEASL RLVSVVDQDK VKLYTFTEYL HQICSWQVEL 420 DKAERTIICS CKKLESDGIP YSHAFAVMKN EDMDEIPKSC ILFRWTQQAK PGEKNIYSIQ 480 LEDSAIQAAR FGALCALSNQ MCFSAVKTKQ GYDEARECII NSASHFKNLW VNDAPLVHKV 540 KKKDNMMDGS IKRSDFDVRE PIVVATKGQK AKHSTHKRKR RQCKNCK

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence

MVGFGIRERD EKKDQKGIVT YKRWVCNREG FRNSKWLNLV DRKKEAKRLT RVGCLATIIV  60
QWNKDIQKGV NPADLEHAIL MHGVGIRIPQ IVDLQAYQAG GHNKMGYTEK DLRNVVDQFH  120
RNALEVGDAS QVLAYLDGRA NGEPNFFYKY AVDVEKRLIR LFWTDSQSRL DYQYFGDVLV  180
FDSTYRTNAY RKPLVILAGV NHHYVTTIFG CALIADETED TYKWVLETFL EAMEKNAPIS  240
VVTDRDGAMR NAIKAVIPYT RHRLYAWHLK RNVVTNTNKG FVLDFGVAMD MICSHEEFEK  300
RWHLLVEKHN LRDNQWVVDL YNKREKWVAA FLRGHFFAVG QNEHKEECIM SQSSPVLITH  360
LRELEGNAAS IFTRKIFLKV RDEISAEASL RLVSVVDQDK VKLYTFTEYL HQICSWQVEL  420
DKAERTIICS CKKLESDGIP YSHAFAVMKN EDMDEIPKSC ILFRWTQQAK PGEKNIYSIQ  480
LEDSAIQAAR FGALCALSNQ MCFSAVKTKQ GYDEARECII NSASHFKNLW VNDAPLVHKV  540
KKKDNMMDGS IKRSDFDVRE PIVVATKGQK AKHSTHKRKR RQCKNCK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-74	FAR1 family protein