PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027109384.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 343aa MW: 39457.5 Da PI: 6.076

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027109384.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.4	1.5e-20	86	176	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn YAk GF +rks+ k+ +g r++vC +eg+r+e+ + ++++r+ ++ trt+C a+++vk + + k++vt++ eHnH+la XP_027109384.1 86 EFYNLYAKLSGFGIRKSNAKRD-ADGISRFRKWVCCCEGYRNEKWFNyEDRKREAKPITRTECGACFRVKYDIkSVKYVVTRFIMEHNHPLA 176 6**************98887.8998999********9988867889999***********998799************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MGQDEALKTH DMVQETENGR MGMDGCCRLR SFDLNQEPEC DRDTFIEESD GSIGGHEDEE 60 TDELVGAIGV DDVMKLTFDT EEEAGEFYNL YAKLSGFGIR KSNAKRDADG ISRFRKWVCC 120 CEGYRNEKWF NYEDRKREAK PITRTECGAC FRVKYDIKSV KYVVTRFIME HNHPLASEAS 180 VQHIRSYRKV SDAEYAQAKS LKLVGARICQ IMKHFVIKAG GYSNVGFCIK DLYNRMDEER 240 RKDIFNGDAE GALGFLAAKK DADDMFFYKY HVHNEGRLAR LFWADSKSRA DFSVFGDVLV 300 FDTTYKINKY RKPLVVLARV NNHLNSTIFG CALLSDERIE TYE

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MGQDEALKTH DMVQETENGR MGMDGCCRLR SFDLNQEPEC DRDTFIEESD GSIGGHEDEE  60
TDELVGAIGV DDVMKLTFDT EEEAGEFYNL YAKLSGFGIR KSNAKRDADG ISRFRKWVCC  120
CEGYRNEKWF NYEDRKREAK PITRTECGAC FRVKYDIKSV KYVVTRFIME HNHPLASEAS  180
VQHIRSYRKV SDAEYAQAKS LKLVGARICQ IMKHFVIKAG GYSNVGFCIK DLYNRMDEER  240
RKDIFNGDAE GALGFLAAKK DADDMFFYKY HVHNEGRLAR LFWADSKSRA DFSVFGDVLV  300
FDTTYKINKY RKPLVVLARV NNHLNSTIFG CALLSDERIE TYE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-42	FAR1 family protein