PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027109388.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family FAR1
Protein Properties Length: 138aa    MW: 16175.7 Da    PI: 9.427
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027109388.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR135.24.1e-112791189
            FAR1 11 GFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89
                     Fs+rk++ +k+k+   +t r+    ke  +++ + + +  +r ra t+tgC+ k+++ + +   k++v++l+l+HnHel
  XP_027109388.1  2 SFSIRKDYLNKNKDAV-TTFRRCSYFKEDVKRKYEGD-VMPKRIRALTKTGCETKIVIVLLRgIMKYRVHELVLDHNHEL 79
                    6999999999984444.44444443444444444444.89999**************9999889***************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    
MSFSIRKDYL NKNKDAVTTF RRCSYFKEDV KRKYEGDVMP KRIRALTKTG CETKIVIVLL  60
RGIMKYRVHE LVLDHNHELH ITQCSHMMPS QRKVSEAQGF QTEINEDVGI LLKQSHELME  120
KEVDGMGNVG YTRDDLKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-07FAR1 family protein