PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027109436.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 768aa MW: 88319.4 Da PI: 7.6436

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027109436.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.2	2.8e-23	92	179	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fYn+YA ++GFsvrk++ +k ++g +t+r++ C keg +++ + + + +rtra t+tgC ak+++ + + + k++v++++leHnHel XP_027109436.1 92 QFYNKYAFKMGFSVRKDYLNKD-KDGVTTSRRYSCCKEGVKRKYEGD-VMPKRTRAPTKTGCGAKMVIVLFRgTMKYRVHDIVLEHNHEL 179 6***************9998.8999************9999.999***************999**************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 768 aa Download sequence
MDCNKLAEDR TPELEMEFNS EEDAYKFYNN YAFKTDFNVC KDYLNKDKDG VTTSRRYSSC 60 KEGSEVMDCS KLAEDGTPEL GMEFNSEEDA YQFYNKYAFK MGFSVRKDYL NKDKDGVTTS 120 RRYSCCKEGV KRKYEGDVMP KRTRAPTKTG CGAKMVIVLF RGTMKYRVHD IVLEHNHELH 180 IVQCAHMMPS QRKVSEAQGF QAEISEDAGL SLKQSHELMG KEAGGMGNVG YTREDLKRYL 240 RTRRERSLKY GEAEAMCGKR PSTILTDQDH AMAAALSVVM PETFHGLCTF HIRRNFMKHL 300 GNHYKENSDL PYMFGACMYE FEEVEQFNRV WEAMVKKHDL ENNEWLSGLY RIRDKWARCM 360 MKERWTAGIR STQLSESLNA AIKNHLKLDH DLVQFFRHFN RVVDEKRHNE LIAEYEMRQK 420 LPMVGLRQTP MLVHASETYS PTVFVAFQNE YGESTAMVIL RQQDAAMIVE FAVMRYDGGP 480 ERIVVFNRND LSVRCSCKKY ENEGILCGHA LKVFDTVGIK IIPPEYIKRR WTKRARAGDC 540 FDRRRREVVA DPKIMISTRY RELAPAMIKV ATRAAMSEDT SKVAITVISD LAKRVELLLS 600 ESEEQPLQNQ KNLNMEERDK IEIVNEMGEA VVARGIKKRG GGKKSRVMRS WIDKFDRVKR 660 KSRLSRTTQT TASESEPTSV SIEEYMFMGC RSSTDSVSTH SMSQTVNDPP NAIAPNIDES 720 ETEERAALLT HCDVDAYHVF APSPQGRNNT QGLQLRADVA VPENEIDE

Sequence ? help Back to Top

Protein Sequence Length: 768 aa Download sequence

MDCNKLAEDR TPELEMEFNS EEDAYKFYNN YAFKTDFNVC KDYLNKDKDG VTTSRRYSSC  60
KEGSEVMDCS KLAEDGTPEL GMEFNSEEDA YQFYNKYAFK MGFSVRKDYL NKDKDGVTTS  120
RRYSCCKEGV KRKYEGDVMP KRTRAPTKTG CGAKMVIVLF RGTMKYRVHD IVLEHNHELH  180
IVQCAHMMPS QRKVSEAQGF QAEISEDAGL SLKQSHELMG KEAGGMGNVG YTREDLKRYL  240
RTRRERSLKY GEAEAMCGKR PSTILTDQDH AMAAALSVVM PETFHGLCTF HIRRNFMKHL  300
GNHYKENSDL PYMFGACMYE FEEVEQFNRV WEAMVKKHDL ENNEWLSGLY RIRDKWARCM  360
MKERWTAGIR STQLSESLNA AIKNHLKLDH DLVQFFRHFN RVVDEKRHNE LIAEYEMRQK  420
LPMVGLRQTP MLVHASETYS PTVFVAFQNE YGESTAMVIL RQQDAAMIVE FAVMRYDGGP  480
ERIVVFNRND LSVRCSCKKY ENEGILCGHA LKVFDTVGIK IIPPEYIKRR WTKRARAGDC  540
FDRRRREVVA DPKIMISTRY RELAPAMIKV ATRAAMSEDT SKVAITVISD LAKRVELLLS  600
ESEEQPLQNQ KNLNMEERDK IEIVNEMGEA VVARGIKKRG GGKKSRVMRS WIDKFDRVKR  660
KSRLSRTTQT TASESEPTSV SIEEYMFMGC RSSTDSVSTH SMSQTVNDPP NAIAPNIDES  720
ETEERAALLT HCDVDAYHVF APSPQGRNNT QGLQLRADVA VPENEIDE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	528	546	KRRWTKRARAGDCFDRRRR
2	542	547	DRRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-44	FAR1 family protein