PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027109449.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

M-type_MADS

Protein Properties

Length: 408aa MW: 45091.8 Da PI: 6.1195

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027109449.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	44.6	1.8e-14	40	78	12	50
HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 + kR++ i KK ELSvLC++++++++++++g++ +++ XP_027109449.1 40 SCKKRKECIKKKTMELSVLCGIKACIVVVGPSGQVETWP 78 667***********************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MVASTNLEHN SMMNEDKQAT KAESSCSKKT KHGTKVESLS CKKRKECIKK KTMELSVLCG 60 IKACIVVVGP SGQVETWPRN PDDVRQIIAM YKDLAAKKGC QIKRFSESSV KVGKAVDNAA 120 EKAKIDEDFG SNNGCRKQEE KGENSSSKAF AEDIVKVINS KLESLEKKKG FLSENKGKEV 180 AYFYGEEETL HEKYFTELWN VPEVGEASDS QGTGKPQLGA APEQSAPSLE TMFKQNLFEN 240 PQIFGDSSDN SEMGLLGGAS ANQEIVQHVP MQFNFNSSNN FDGGINLSNL GIHNVQFPNV 300 QFPHQFPWFD SSNYQTGMLS VMPQLQVMNF PQLPLIQGMN LSGLPLMQGM NFSAGPSMQS 360 TTLAPHRFDE GSLPQLCPLP LQAFGPEYHS PQPLTYNPSS SSWQQYQF

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MVASTNLEHN SMMNEDKQAT KAESSCSKKT KHGTKVESLS CKKRKECIKK KTMELSVLCG  60
IKACIVVVGP SGQVETWPRN PDDVRQIIAM YKDLAAKKGC QIKRFSESSV KVGKAVDNAA  120
EKAKIDEDFG SNNGCRKQEE KGENSSSKAF AEDIVKVINS KLESLEKKKG FLSENKGKEV  180
AYFYGEEETL HEKYFTELWN VPEVGEASDS QGTGKPQLGA APEQSAPSLE TMFKQNLFEN  240
PQIFGDSSDN SEMGLLGGAS ANQEIVQHVP MQFNFNSSNN FDGGINLSNL GIHNVQFPNV  300
QFPHQFPWFD SSNYQTGMLS VMPQLQVMNF PQLPLIQGMN LSGLPLMQGM NFSAGPSMQS  360
TTLAPHRFDE GSLPQLCPLP LQAFGPEYHS PQPLTYNPSS SSWQQYQF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11250.1	3e-09	M-type_MADS family protein