PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027109565.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 369aa MW: 42809.8 Da PI: 7.3769

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027109565.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.6	2e-23	26	113	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfYn+YA ++GFsvrk++ +k ++g +t+r++ C keg +++ + + + +rtra +tgC ak+++ + + + k++v++l+leHnHel XP_027109565.1 26 KFYNKYAFKMGFSVRKNYLNKD-KDGVTTSRRYSCCKEGVKRKYEGD-VMPKRTRAPMKTGCGAKMVIVLFRgTMKYRVHDLVLEHNHEL 113 6***************9998.8999************9999.9999**************999**************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MDYSKLAENG TPELGMEFNS EEDAYKFYNK YAFKMGFSVR KNYLNKDKDG VTTSRRYSCC 60 KEGVKRKYEG DVMPKRTRAP MKTGCGAKMV IVLFRGTMKY RVHDLVLEHN HELHIAQCAH 120 MMPSQRKVSV AQGFQAEISE DAGLSLKQSH ELMGTEAGGM GNVGYTRDDL KRYLRTRRER 180 SLKYGEAGSM LNYFQEQTLE NPSFFHAVQL DCEEQITNIF WADAGMLIDY NFFGDVVTFD 240 TTYKTNKEYR PLGVFVGFNQ HRQIVIFGAA LMYDETIDSF KWVFGTFLEA MCGKHPSTIL 300 TDQDHAMAAA LSIVMPETFH GLCTFHIRRN FMKHLGNHYK ENSDLPYMFG ACMYEFEEVE 360 QFNRVWRRW

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MDYSKLAENG TPELGMEFNS EEDAYKFYNK YAFKMGFSVR KNYLNKDKDG VTTSRRYSCC  60
KEGVKRKYEG DVMPKRTRAP MKTGCGAKMV IVLFRGTMKY RVHDLVLEHN HELHIAQCAH  120
MMPSQRKVSV AQGFQAEISE DAGLSLKQSH ELMGTEAGGM GNVGYTRDDL KRYLRTRRER  180
SLKYGEAGSM LNYFQEQTLE NPSFFHAVQL DCEEQITNIF WADAGMLIDY NFFGDVVTFD  240
TTYKTNKEYR PLGVFVGFNQ HRQIVIFGAA LMYDETIDSF KWVFGTFLEA MCGKHPSTIL  300
TDQDHAMAAA LSIVMPETFH GLCTFHIRRN FMKHLGNHYK ENSDLPYMFG ACMYEFEEVE  360
QFNRVWRRW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-68	FAR1 family protein