PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027109717.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MIKC_MADS

Protein Properties

Length: 253aa MW: 28670.9 Da PI: 9.5288

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027109717.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.1	8.6e-32	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ XP_027109717.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58 79**********************************************95 PP
2	K-box	100.9	1.8e-33	78	169	7	98
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++e++++s++qe++kLk+++e+Lqr qRhllGedL++L++keLq+Le+qLe +l + R++K++l++eq+eel++ke++l + nk+L+ k+ XP_027109717.1 78 ENAAERETQSWYQEVSKLKAKYESLQRAQRHLLGEDLGPLNVKELQNLEKQLEGALLQARQRKTQLMIEQMEELRRKERQLGDLNKQLKIKV 169 3478999*********************************************************************************9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSS 60 GITKTLERYQ RCSLSPQENA AERETQSWYQ EVSKLKAKYE SLQRAQRHLL GEDLGPLNVK 120 ELQNLEKQLE GALLQARQRK TQLMIEQMEE LRRKERQLGD LNKQLKIKVS LEMSSLEAAE 180 GQGLIRGLPW LWSSSVPSGS SMFPMHTSHP SAAMDCDPEP VLQIGYHQYA PAEGPSAPRS 240 MAIESNIIQG WAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	1e-104	MIKC_MADS family protein