PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027109722.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 586aa MW: 65817.2 Da PI: 8.8954

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027109722.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.7	7.6e-20	30	76	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEd++l dav+++ g++Wk+Ia++++ Rt+ qc +rwqk+l XP_027109722.1 30 RGRWTEEEDKILQDAVQRFNGKCWKKIAKCLP-DRTDVQCLHRWQKVL 76 89****************************.**********986 PP
2	Myb_DNA-binding	58.7	1.4e-18	82	128	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+l+v++v + G++ W+ Ia+ ++ gR +kqc++rw+++l XP_027109722.1 82 KGPWTKEEDDLIVELVGKQGNKKWSEIAKQLP-GRIGKQCRERWHNHL 128 79****************************.***********97 PP
3	Myb_DNA-binding	52.5	1.1e-16	134	176	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT eE+++l++a+ +G++ W+ Ia+++ gR+++++k++w+ XP_027109722.1 134 KNAWTREEELILIEAHSAYGNR-WAEIAKCLS-GRSENSIKNHWN 176 689*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 586 aa Download sequence
MDGNGTGESN DPKHHAACWR VSGPARRSSR GRWTEEEDKI LQDAVQRFNG KCWKKIAKCL 60 PDRTDVQCLH RWQKVLNPEL VKGPWTKEED DLIVELVGKQ GNKKWSEIAK QLPGRIGKQC 120 RERWHNHLNP EINKNAWTRE EELILIEAHS AYGNRWAEIA KCLSGRSENS IKNHWNCSLK 180 KKLEQNSSYS VFDHPEFADP TPCSSKTEVG YGGDLMVKQS SGAGLLAIQN MNSEAISDAC 240 SLDLNLGLPN GRDSYLQDSK RENCRHPSRQ ASNSIEPSSP ACTEIIQNQD KGGHAILGDH 300 YHIIPRLSKI SSNGFVTEHV NAQSTCYKDG HLMNCPSQGS PCLHLHQHLK QAWGADGDNN 360 TIVIGGNVFA VSSDMKYGCP LSRDCRDFSY MGHSKSSHSI VPKDVVSEHS TISRMYKNFV 420 GGSYYGLCYE PLQEKDLKVF LSTGRFPSTD SYIRQPSTST TLMKPYILEK RSYVVSSTKS 480 ILRRAAMTFK NTPSIIRKRK FPSSFQASNS KNMDKFLTTV EGLDSYNERL PGSHEFPPAG 540 GDNQLPLLRE LYASQRMRKL KISSGISSVG KCLKDAFDDV WDKRKS

Sequence ? help Back to Top

Protein Sequence Length: 586 aa Download sequence

MDGNGTGESN DPKHHAACWR VSGPARRSSR GRWTEEEDKI LQDAVQRFNG KCWKKIAKCL  60
PDRTDVQCLH RWQKVLNPEL VKGPWTKEED DLIVELVGKQ GNKKWSEIAK QLPGRIGKQC  120
RERWHNHLNP EINKNAWTRE EELILIEAHS AYGNRWAEIA KCLSGRSENS IKNHWNCSLK  180
KKLEQNSSYS VFDHPEFADP TPCSSKTEVG YGGDLMVKQS SGAGLLAIQN MNSEAISDAC  240
SLDLNLGLPN GRDSYLQDSK RENCRHPSRQ ASNSIEPSSP ACTEIIQNQD KGGHAILGDH  300
YHIIPRLSKI SSNGFVTEHV NAQSTCYKDG HLMNCPSQGS PCLHLHQHLK QAWGADGDNN  360
TIVIGGNVFA VSSDMKYGCP LSRDCRDFSY MGHSKSSHSI VPKDVVSEHS TISRMYKNFV  420
GGSYYGLCYE PLQEKDLKVF LSTGRFPSTD SYIRQPSTST TLMKPYILEK RSYVVSSTKS  480
ILRRAAMTFK NTPSIIRKRK FPSSFQASNS KNMDKFLTTV EGLDSYNERL PGSHEFPPAG  540
GDNQLPLLRE LYASQRMRKL KISSGISSVG KCLKDAFDDV WDKRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	1e-83	MYB family protein