PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027109743.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 251aa MW: 27231.3 Da PI: 4.9193

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027109743.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.2	7.5e-40	48	149	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll +lpe++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ael XP_027109743.1 48 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHLPENRRNDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAEL 142 7*********************9989*************************************************************** PP DUF260 95 allkeel 101 a+++++l XP_027109743.1 143 AVVQTQL 149 99885 PP

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence
MNDQSKSDQG MLDSGRRKGS SEKRASSLIE ATEDAVLNVG VSPPPSAPCG ACKFLRRKCI 60 SGCIFAPHFG SDQGAARFAA VHKVFGASNV SKLLLHLPEN RRNDAVVTIS YEAQARLSDP 120 VYGCVSTILA LQQQVASLQA ELAVVQTQLM NSRLAMANAL RDSQAIQQQQ IVALQPAYSN 180 TSAASNTLMN INSFNSNFDL VGEAEAAPSN SFDPVHLSQV PQEVEEEDEE ESQNHLDFTS 240 QIFHQDNKTF F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	6e-61	LBD family protein