PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027109776.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ERF
Protein Properties Length: 171aa    MW: 19055.8 Da    PI: 9.7605
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027109776.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.3e-1873124155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++y+GVr+++ +g+++AeIrdp +     r++lg++ t+eeAa a++  + +++g
  XP_027109776.1  73 TRYRGVRRRP-WGKFAAEIRDPXKK--GSRIWLGTYETPEEAAMAYDGXAFEIRG 124
                     68********.**********8653..3*******************99999998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    
MYSEAMSNTD LALFDSINQQ LLNDSLFSDI FPSFSHDATI DDFKSNTSFN NSLEEDRKGS  60
AAARGKNASA EWTRYRGVRR RPWGKFAAEI RDPXKKGSRI WLGTYETPEE AAMAYDGXAF  120
EIRGARAMLN FPHLIGSNMC STPQTVSPKR RSPEPSASSS PKKRKLANAS I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149165KRRSPEPSASSSPKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.15e-36ERF family protein