PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027110139.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ERF

Protein Properties

Length: 460aa MW: 51523.6 Da PI: 5.0126

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027110139.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	63.4	4.7e-20	202	251	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdps r +r +lg+++taeeAa +++a+ kl+g XP_027110139.1 202 KFRGVRQRP-WGKWAAEIRDPS----RrARLWLGTYDTAEEAAMVYDNAAIKLRG 251 89*****.******84....34***********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MCVGHFKAIF LYLHALYSSA FFFFTLPIDF PLLFYVVFNS NSRATATTLV RIQHSKVWGV 60 GEKRERKRKK MVDRGFLCPV KYTEHRSLTK KFALKPKKSS GRSSIVPRTV RISVTDPDAT 120 DSSSDEDELF GRQRVKRYIS EIKIETAAVC QQNSNNVISA SSNDLAPHHH PKKKTAEALQ 180 AKQRPMKAKE PPVAAARGAV RKFRGVRQRP WGKWAAEIRD PSRRARLWLG TYDTAEEAAM 240 VYDNAAIKLR GPDALTNFIT PPAKEKPQVN VASTSCYESG EESHNLSSPT SVLRFRSSQS 300 SEEAEPECRS EGVEGPVPAD CTDEQTVQEE TDGEPWQEPV PEVAEECQGE TRHMIPDYSN 360 EYMPMDVPFL DNFFNFQSPE RITFDDTVPP SFSNDTFDLG LDVSFDDDVL PGLFADTAAA 420 SAGFGEFNDS FQDFGSVELN VDDYFQDMND FASADALLAV

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MCVGHFKAIF LYLHALYSSA FFFFTLPIDF PLLFYVVFNS NSRATATTLV RIQHSKVWGV  60
GEKRERKRKK MVDRGFLCPV KYTEHRSLTK KFALKPKKSS GRSSIVPRTV RISVTDPDAT  120
DSSSDEDELF GRQRVKRYIS EIKIETAAVC QQNSNNVISA SSNDLAPHHH PKKKTAEALQ  180
AKQRPMKAKE PPVAAARGAV RKFRGVRQRP WGKWAAEIRD PSRRARLWLG TYDTAEEAAM  240
VYDNAAIKLR GPDALTNFIT PPAKEKPQVN VASTSCYESG EESHNLSSPT SVLRFRSSQS  300
SEEAEPECRS EGVEGPVPAD CTDEQTVQEE TDGEPWQEPV PEVAEECQGE TRHMIPDYSN  360
EYMPMDVPFL DNFFNFQSPE RITFDDTVPP SFSNDTFDLG LDVSFDDDVL PGLFADTAAA  420
SAGFGEFNDS FQDFGSVELN VDDYFQDMND FASADALLAV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	70	RKRKK
2	67	97	KRKKMVDRGFLCPVKYTEHRSLTKKFALKPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27950.1	5e-66	ERF family protein