PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027110410.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MIKC_MADS

Protein Properties

Length: 230aa MW: 26461.3 Da PI: 9.2005

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027110410.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	96.3	1.3e-30	24	73	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss XP_027110410.1 24 RIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSQKGKLYEFSS 73 8***********************************************96 PP
2	K-box	69.5	1.1e-23	96	184	9	97
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 e+ ++l+ e+ ++ + ie L+ +qR+llG+dL+s sl+eLqq+ +qLe+sl+++R++K++l++e+ie+l+ ke l een +L++k XP_027110410.1 96 DIEKYVQELKLEAINMANTIEFLEASQRKLLGQDLGSSSLEELQQIDSQLERSLTNVRARKTQLFKEEIERLRAKEMLLLEENARLSQK 184 346668999******************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MLVGDLGSHT TCRKMVRGKI QMRRIENATS RQVTFSKRRN GLLKKAYELS VLCDAEVALI 60 IFSQKGKLYE FSSSNMQKTI DKYRGCVKED QRSDQDIEKY VQELKLEAIN MANTIEFLEA 120 SQRKLLGQDL GSSSLEELQQ IDSQLERSLT NVRARKTQLF KEEIERLRAK EMLLLEENAR 180 LSQKCGLESW HAPAKRKEIG SCSQSTQSSE VETGLFIGLP ETRVLEYRRF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62165.3	2e-83	MIKC_MADS family protein