PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027110660.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 222aa MW: 23834.1 Da PI: 7.8236

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027110660.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	115.5	3.4e-36	39	136	1	97
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk +rr+C+++ C+++pyfp ++p +fa vh++FGasnv+k+l+++pe+ r +++ slvyeA+ar+rdPvyG+++ i++lq+++e+l+++l XP_027110660.1 39 PCAACKQMRRHCSAKkCPFSPYFPPNEPLRFASVHRVFGASNVSKMLAEVPESLRAEVAISLVYEADARLRDPVYGCTAEISALQRRVESLQQQL 133 7*********8655****************************************************************************9 PP DUF260 95 all 97 +++ XP_027110660.1 134 NSA 136 976 PP

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence
MSAQREKVEK VKIEPDYGLK GLNQIGGGGG GEGGRVIRPC AACKQMRRHC SAKKCPFSPY 60 FPPNEPLRFA SVHRVFGASN VSKMLAEVPE SLRAEVAISL VYEADARLRD PVYGCTAEIS 120 ALQRRVESLQ QQLNSAWDEL LKYKNPHHEA DIFNAEPPPS HDVALLPSVA TTAAFPPPPS 180 PTVLLVPPPP PTTSGSLLLS SSASSNQYCP LSAAADFSTI SN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	1e-46	LBD family protein