PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027110794.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

NF-X1

Protein Properties

Length: 869aa MW: 96999.9 Da PI: 8.3895

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027110794.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	20	1.5e-06	236	254	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG H+C+++CH G+Cp C+ XP_027110794.1 236 CGSHRCGEICHDGDCPMCR 254 ******************8 PP
2	zf-NF-X1	16.3	2.1e-05	289	308	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C++ CH+G+C++Cp+ XP_027110794.1 289 CGRHVCERGCHKGNCGECPL 308 ******************95 PP
3	zf-NF-X1	18.1	6e-06	396	415	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C++ C+ G+CppC++ XP_027110794.1 396 CGRHACKRRCCDGDCPPCSE 415 ******************85 PP
4	zf-NF-X1	16.4	2e-05	425	442	3	20
zf-NF-X1 3 kHkCqklCHeGpCppCpq 20 +HkC ++CH+G C pCp+ XP_027110794.1 425 NHKCPAPCHRGACSPCPL 442 7***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 869 aa Download sequence
MATSNTTLLP PLSPPSSDSD SDSGTSSRQH QHTDLSSTIF KSYLELTGHQ SSPQHQDLIK 60 IQSFLTSSRS GALSCLICLE RIKPTDPTWS CSSRCFAVFH LLCIQSWAHQ SSNLAAARAA 120 SRAATLNDDT LRWHCPKCRI EYPKSQTPKY YYCFCGKLEN PPHDPWILPH SCGEICGRPL 180 TYNCGHECLL LCHPGPCPSC PKLVKTKCYC GATEDVRRCG FKDFSCKGVC RKTLACGSHR 240 CGEICHDGDC PMCRKKGVYK CQCGKVELER ECCERIFRCE NPCQKLLGCG RHVCERGCHK 300 GNCGECPLQG KRTCPCGKRV YEGMACDVAV PLCGATCDKL LSCGFHRCPE RCHRGPCIET 360 CRTVVTKSCR CGSARKQIPC YQDLTCERKC QKVRDCGRHA CKRRCCDGDC PPCSEICDRR 420 LRCRNHKCPA PCHRGACSPC PLMVMISCSC GETHFEVPCG TETEQKPPKC PKRCRVAPLC 480 THRLICKPHK CHYGACPPCR LICDEEYSCG HKCKLRCHGP RPPALPEFTL KPKKKKSSHE 540 AEHIPGTLCP PCPELVWRSC VGNHIGAERM MICSNPAEFS CDNLCGTLLS CGNHYCTKIC 600 HALKSDSKSY SSVLAESCEE CNLPCQKERS PPCPHPCPLV CHPGECPPCH SLIKRACHCG 660 AMVHALKCIY YNSLDEREQV AVRSCGGPCH RKLPNCTHLC PEICHRGQCP SPDKCSKKVI 720 VRCGCQTLKK EWSCKDVQEA YRNAGSDPKD VPKTQFGLGL LPCDPDCRSK MKITDSELQL 780 RKSVVTQKKE PDGEKPVAKR RRRRERVQED KKASRLQVIS GATRKVLLIV IILVTLIAVA 840 YCGYNGLLWL SDWMNEAELQ RQRRIYPRI

Sequence ? help Back to Top

Protein Sequence Length: 869 aa Download sequence

MATSNTTLLP PLSPPSSDSD SDSGTSSRQH QHTDLSSTIF KSYLELTGHQ SSPQHQDLIK  60
IQSFLTSSRS GALSCLICLE RIKPTDPTWS CSSRCFAVFH LLCIQSWAHQ SSNLAAARAA  120
SRAATLNDDT LRWHCPKCRI EYPKSQTPKY YYCFCGKLEN PPHDPWILPH SCGEICGRPL  180
TYNCGHECLL LCHPGPCPSC PKLVKTKCYC GATEDVRRCG FKDFSCKGVC RKTLACGSHR  240
CGEICHDGDC PMCRKKGVYK CQCGKVELER ECCERIFRCE NPCQKLLGCG RHVCERGCHK  300
GNCGECPLQG KRTCPCGKRV YEGMACDVAV PLCGATCDKL LSCGFHRCPE RCHRGPCIET  360
CRTVVTKSCR CGSARKQIPC YQDLTCERKC QKVRDCGRHA CKRRCCDGDC PPCSEICDRR  420
LRCRNHKCPA PCHRGACSPC PLMVMISCSC GETHFEVPCG TETEQKPPKC PKRCRVAPLC  480
THRLICKPHK CHYGACPPCR LICDEEYSCG HKCKLRCHGP RPPALPEFTL KPKKKKSSHE  540
AEHIPGTLCP PCPELVWRSC VGNHIGAERM MICSNPAEFS CDNLCGTLLS CGNHYCTKIC  600
HALKSDSKSY SSVLAESCEE CNLPCQKERS PPCPHPCPLV CHPGECPPCH SLIKRACHCG  660
AMVHALKCIY YNSLDEREQV AVRSCGGPCH RKLPNCTHLC PEICHRGQCP SPDKCSKKVI  720
VRCGCQTLKK EWSCKDVQEA YRNAGSDPKD VPKTQFGLGL LPCDPDCRSK MKITDSELQL  780
RKSVVTQKKE PDGEKPVAKR RRRRERVQED KKASRLQVIS GATRKVLLIV IILVTLIAVA  840
YCGYNGLLWL SDWMNEAELQ RQRRIYPRI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	799	804	KRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein