PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027110817.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 384aa    MW: 42193.5 Da    PI: 8.0593
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027110817.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.72.5e-07147170123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y+Cp+Cg+ F ++s+L++H+++ H
  XP_027110817.1 147 YPCPICGEIFQNPSLLEQHQSVkH 170
                     99******************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    
MASLRPLLSN LLYLLLLLLL HLGCFIFNTS SSSSHRQSKK RKLSDTPVTP SPPASRLKFT  60
PSKALSSSWS FLKRAFCSKP ATPTSSPAAI PILSPSSSTR SLTQPATAIH LGSSDTLLSD  120
HQTSIRPVSE SDISSDQPFF PLRNNIYPCP ICGEIFQNPS LLEQHQSVKH AVSELVDGDT  180
GKNIVNIIFR TGWPGMAKSP AVHRILKIHC GPKILMRFEE YRECVMSAAA GNGGVRRRDE  240
RCIADGNELL RFHCTTFLCE LGQNGNSSLC NHQYCSVCGI IASGFSPKMD GISTLSTSWR  300
AHASIPEDME EEFKYLRVKR AMLVCRVIAG RIGCDPEDAD KLDPGFDSLV GRENGVPARL  360
DEEDELLVFN PRAVLPCFVI VYTV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-104C2H2 family protein