PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027111554.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 1666aa MW: 180741 Da PI: 5.8921

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027111554.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.3	8.5e-09	762	803	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e + d + +G++ +++Ia+ + ++t +c+++++k XP_027111554.1 762 PWTSEEKEMFMDKLAVHGKD-FTKIASFLV-HKTTADCVEFYYK 803 8***************99.*****.*********98 PP
2	Myb_DNA-binding	33.4	1e-10	981	1021	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE ++++av +G++ ++ I+r++ +R+++qck ++ XP_027111554.1 981 DWTDEEKAIFIQAVSSYGKD-FAMISRYVS-TRSREQCKVFFS 1021 5***************99.*****.******8876 PP

Sequence ? help Back to Top
Protein Sequence Length: 1666 aa Download sequence
MLRLAGFLIS ATDHLLGGRH LYPEESSHGF VPSRPSDRVF EDENCRGSVS GKYSRSNRES 60 RGPFGQKDWK GQSWEATPSP NAPGRPLETS DQHRSVDEMQ TCTSSHPHLD SANSWDQSHL 120 KDQHEKSSGV VNALGSSGQR LERENSLGSM DWKPLKWTRS GSLSSRGSGF SHSSSSKSMG 180 ADSNEMKAEV QPSNVTPVQS PSGNAATPVA APAAAYETSA GASEEMSSRK KPRLGWGEGL 240 AKYEKKKVEG VDDTTLKNGT IICSSSREPL HLHSSHLADK SPRITAFSDC ASPATPSSVG 300 CSSSPGLEEK QFIKAPSVDN EATNLSPSIA SQDHRDHIEG ATFNLENLDL AESGHFNSAI 360 NELLLSDDLI SVDSGFVKST AINKLLVWKG DVLKKLEMTE SEIDRLEGEL KTLASIPESS 420 CHHPAVSSSL PMDCFSKPAE EQDVTSSISH RPALLDLGSS GHNDAEKMPN VLVDDDAKVK 480 DEDVDSPGSA TSKFVEVVSS GKDASPSEPG SEPGNDSVCI SNTDCAMSKN LELSYVGNGV 540 HEDNGGENFQ LVASCSPTHL DEISLCDDKE LKLCESIFAS NKESASRAAE VFNKLLPADL 600 CKFDISGVCS LKSNSIVKEN FLRRKRFQQF KERCIALKYR ALQHLWKADV CSLSMRRFRV 660 KSHKKLDLSL RTVLNSSQKH RTSFRSRLSS HDGNVSSGSN TVMMNFISKL LSDSQVKPCR 720 DTLKMPAMIL DKKEKMISRF ISSNGLVEDP SAVEKERSMI NPWTSEEKEM FMDKLAVHGK 780 DFTKIASFLV HKTTADCVEF YYKNHKSDCL KKTKKHPEYP KQGKSYTANN YLVASGKRWH 840 CEANAASLDI LGAASAIAAN VDDGMEIQQT STSKYLLGRS SDYKSSKGDN GLLERLSSLD 900 ADNNERETAA ADVLAGICGS LSSEAMSSCI TSAVDPGEGY HEWKYSRVGS SSRLPLTPEA 960 MQNGDEDTCS DESCGEMDPT DWTDEEKAIF IQAVSSYGKD FAMISRYVST RSREQCKVFF 1020 SKARKCLGLD MISPGPGNVV RRDASGGSDT DDVGVVETGS ITCSEKSGVK LEVDLPCPEV 1080 KLNIEPDSAG LANVNPDLNH LEEISGTGDR AAVEAGLQSK NLTDDSQMEE KPEQEADGNG 1140 DIQSVHSGEV EQGTAVTTRG VGETSDSANT LDTQIHSGAL EKRDEHLDAE MEGLSPVSWE 1200 SSINDRKEKD DANQKDVNGM DQDLKSTPDG DISGDRQIGV LETDSVGRPC VVPIEQNGFP 1260 APMKSVPQSC AVKCQTPNEA TSSALEAVKI SGEQGHQVTR VGEKLRSGSS LLGSVDPCQI 1320 LKGYPLPPST TREVNGNSSC RRSATPQSFP KVDNNFHRDR HLAHDSYLQK CNGVKHYSSI 1380 AELPFKFREQ SRDINPDHQS GSPSDVEKPR RNGDVKLFGQ ILTKPSYQPK SSSSRQQNGD 1440 NENQQSKIGK PLGTKFASDQ AIGGNLSQTK LDRNNLLGTE NLPVRSFAYW DGSRIQTGLH 1500 SLPDSAMLLA KYPAAFGNYV LPSSKLEQLP VHGVNNGERS LNGSAVFPAR EIGSSNAAAD 1560 YQAYRSRELQ PFTLDMKQRQ DAVLSEMHRR NGFDVVSGMQ QAARGLVGIN VVSRAGILVG 1620 GQCTGVSDPV AAIKMHYSKA EQLNGGQTAS IIREDDSWRG KGSIGR

Sequence ? help Back to Top

Protein Sequence Length: 1666 aa Download sequence

MLRLAGFLIS ATDHLLGGRH LYPEESSHGF VPSRPSDRVF EDENCRGSVS GKYSRSNRES  60
RGPFGQKDWK GQSWEATPSP NAPGRPLETS DQHRSVDEMQ TCTSSHPHLD SANSWDQSHL  120
KDQHEKSSGV VNALGSSGQR LERENSLGSM DWKPLKWTRS GSLSSRGSGF SHSSSSKSMG  180
ADSNEMKAEV QPSNVTPVQS PSGNAATPVA APAAAYETSA GASEEMSSRK KPRLGWGEGL  240
AKYEKKKVEG VDDTTLKNGT IICSSSREPL HLHSSHLADK SPRITAFSDC ASPATPSSVG  300
CSSSPGLEEK QFIKAPSVDN EATNLSPSIA SQDHRDHIEG ATFNLENLDL AESGHFNSAI  360
NELLLSDDLI SVDSGFVKST AINKLLVWKG DVLKKLEMTE SEIDRLEGEL KTLASIPESS  420
CHHPAVSSSL PMDCFSKPAE EQDVTSSISH RPALLDLGSS GHNDAEKMPN VLVDDDAKVK  480
DEDVDSPGSA TSKFVEVVSS GKDASPSEPG SEPGNDSVCI SNTDCAMSKN LELSYVGNGV  540
HEDNGGENFQ LVASCSPTHL DEISLCDDKE LKLCESIFAS NKESASRAAE VFNKLLPADL  600
CKFDISGVCS LKSNSIVKEN FLRRKRFQQF KERCIALKYR ALQHLWKADV CSLSMRRFRV  660
KSHKKLDLSL RTVLNSSQKH RTSFRSRLSS HDGNVSSGSN TVMMNFISKL LSDSQVKPCR  720
DTLKMPAMIL DKKEKMISRF ISSNGLVEDP SAVEKERSMI NPWTSEEKEM FMDKLAVHGK  780
DFTKIASFLV HKTTADCVEF YYKNHKSDCL KKTKKHPEYP KQGKSYTANN YLVASGKRWH  840
CEANAASLDI LGAASAIAAN VDDGMEIQQT STSKYLLGRS SDYKSSKGDN GLLERLSSLD  900
ADNNERETAA ADVLAGICGS LSSEAMSSCI TSAVDPGEGY HEWKYSRVGS SSRLPLTPEA  960
MQNGDEDTCS DESCGEMDPT DWTDEEKAIF IQAVSSYGKD FAMISRYVST RSREQCKVFF  1020
SKARKCLGLD MISPGPGNVV RRDASGGSDT DDVGVVETGS ITCSEKSGVK LEVDLPCPEV  1080
KLNIEPDSAG LANVNPDLNH LEEISGTGDR AAVEAGLQSK NLTDDSQMEE KPEQEADGNG  1140
DIQSVHSGEV EQGTAVTTRG VGETSDSANT LDTQIHSGAL EKRDEHLDAE MEGLSPVSWE  1200
SSINDRKEKD DANQKDVNGM DQDLKSTPDG DISGDRQIGV LETDSVGRPC VVPIEQNGFP  1260
APMKSVPQSC AVKCQTPNEA TSSALEAVKI SGEQGHQVTR VGEKLRSGSS LLGSVDPCQI  1320
LKGYPLPPST TREVNGNSSC RRSATPQSFP KVDNNFHRDR HLAHDSYLQK CNGVKHYSSI  1380
AELPFKFREQ SRDINPDHQS GSPSDVEKPR RNGDVKLFGQ ILTKPSYQPK SSSSRQQNGD  1440
NENQQSKIGK PLGTKFASDQ AIGGNLSQTK LDRNNLLGTE NLPVRSFAYW DGSRIQTGLH  1500
SLPDSAMLLA KYPAAFGNYV LPSSKLEQLP VHGVNNGERS LNGSAVFPAR EIGSSNAAAD  1560
YQAYRSRELQ PFTLDMKQRQ DAVLSEMHRR NGFDVVSGMQ QAARGLVGIN VVSRAGILVG  1620
GQCTGVSDPV AAIKMHYSKA EQLNGGQTAS IIREDDSWRG KGSIGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-111	MYB family protein