PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027111779.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LSD

Protein Properties

Length: 258aa MW: 27644.8 Da PI: 4.4516

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027111779.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	35.1	2.2e-11	169	193	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+YP+G ++V+C++C+tV XP_027111779.1 169 CGSCRLLLAYPPGVKYVQCSCCQTV 193 ************************9 PP
2	zf-LSD1	36.5	8.2e-12	207	231	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GApsVRC +C V XP_027111779.1 207 CGGCAVLLMYPYGAPSVRCCSCRSV 231 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence
MGTEEKDLVK GGGGGGGEDD DDDDGPPPGF HCIATRIEEN LVKEEKDAEI NENEDDEDVD 60 GPPPGWSSIP PATFQPVHPS DVEMSDKQKE DENEEGPPPG WHSVPLASQS SEAVPADTQM 120 GNHEDRTKCI DEGSQPGQKS VPPLKLLPPT PPRPPPAVSS PSEKGQMVCG SCRLLLAYPP 180 GVKYVQCSCC QTVNLVLEDH QVGQVKCGGC AVLLMYPYGA PSVRCCSCRS VTEIGAHNRR 240 PPLSVQQARR PLSVNRVH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-36	LSD family protein