PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027112223.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 217aa MW: 23424.2 Da PI: 7.4546

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027112223.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	76.9	2.3e-24	45	146	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + + XP_027112223.1 45 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGDTWKFRHIYRGTPRRHLLTTGWSTFVNSKKLVAGDSIVFL--RAK 135 89**************************996555555..89*******************************************..347 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_027112223.1 136 NGDLCVGIRRA 146 8888**997 PP

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence
MADSETDEVF AKVQLIPMEG NGADFDEDGV GGVSGMDNRE KPTSFAKTLT QSDANNGGGF 60 SVPRYCAETI FPRLDYSADP PVQTILAKDV HGDTWKFRHI YRGTPRRHLL TTGWSTFVNS 120 KKLVAGDSIV FLRAKNGDLC VGIRRARRGV GGGLGPSSGW NAAGRSCVMP HGGFSAFLRE 180 DESKLTRNGS ESNSGTSVSI NLCVDEFAPQ KVDFRLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28350.1	4e-79	ARF family protein