PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027112380.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 254aa MW: 29495.6 Da PI: 6.9497

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027112380.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.5	1e-17	22	113	2	100
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 fk++ + l ++rl +p +f+++ g +k ++le++ g W+vk+ ++ +g ++l++ W++Fv++n L+e Df++F++d+ ++f + XP_027112380.1 22 FKIF---NQLVENRLKIPPQFVRDVliG----IPKRIILETSYGSCWSVKV-VKTDDGDVFLGDDWQKFVEDNLLQEHDFLLFHYDHGdRCF--T 106 5555...3344578******999644....4457***********.4666666************************765888.. PP EEEE-SS CS B3 94 vkvfrks 100 v++f+ks XP_027112380.1 107 VQIFDKS 113 ****985 PP
2	B3	74.9	9.4e-24	171	251	10	96
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 v+ ++++pk+fae+h +k ++++tl++ +g++Wev++ + ++g +v+ +GW +Fv++n+Lk g +++F+l+g++ v++ XP_027112380.1 171 VNPPFLMIIPKSFAEKHFQK--AKTKITLKNIEGKEWEVNY--TINGGNFVFVGGWTRFVRDNKLKIGNVCIFELIGEKVL--QVHI 251 3444789********655..3458***********..999999*************************96655..6665 PP

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence
MVNKSLGKDK DEIILDQRPA FFKIFNQLVE NRLKIPPQFV RDVLIGIPKR IILETSYGSC 60 WSVKVVKTDD GDVFLGDDWQ KFVEDNLLQE HDFLLFHYDH GDRCFTVQIF DKSGVERTNQ 120 EVANSGTKNL DQHTTHVQPR EKSQSREEGA TLQEFCSQHP FFETNIKRYN VNPPFLMIIP 180 KSFAEKHFQK AKTKITLKNI EGKEWEVNYT INGGNFVFVG GWTRFVRDNK LKIGNVCIFE 240 LIGEKVLQVH ISDD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18090.1	6e-20	B3 family protein